JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR162_chr12_6816821_6832421	0/0	c0006	1767	5	0	1	0	1	3	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0007	1767	3	0	2	0	0	1	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0008	1767	2	0	0	2	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0009	1767	2	0	0	0	0	2	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0010	1767	2	0	0	2	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0011	1767	2	0	0	2	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0012	1767	2	0	0	2	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0013	1767	2	1	0	0	1	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0014	1767	2	0	0	2	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0015	1767	2	0	2	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0016	1767	1	0	0	1	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0017	1767	1	0	0	1	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0018	1767	1	0	0	1	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0019	1767	1	0	0	1	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0020	1767	1	0	1	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0021	1767	1	1	0	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0022	1767	1	0	0	1	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0023	1767	1	0	0	0	0	1	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0024	1767	1	0	1	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0025	1767	1	1	0	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0026	1767	1	0	0	1	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR162_chr12_6816821_6832421	0/0	c0027	1767	1	1	0	0	0	0	copy fasta	GPR162	chr12	6816821	6832421
GPR171_chr3_151192832_151208216	1/1	c0001	960	353	66	64	171	16	34	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	c0002	960	53	24	5	17	1	6	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	c0003	960	32	0	0	29	1	2	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	c0004	960	7	0	7	0	0	0	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	c0005	960	2	2	0	0	0	0	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	c0006	960	1	0	0	1	0	0	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	c0007	960	1	0	0	1	0	0	copy fasta	GPR171	chr3	151192832	151208216
GPR171_chr3_151192832_151208216	0/0	c0008	960	1	0	0	1	0	0	copy fasta	GPR171	chr3	151192832	151208216
GPR173_chrX_53043789_53085615	1/1	c0001	1122	122	24	28	51	4	13	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0002	1122	36	23	5	5	2	1	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0003	1122	34	3	1	20	3	7	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0004	1123	2	0	2	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0005	1123	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0006	1121	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0007	1124	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0008	1124	1	0	1	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0009	1123	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0010	1126	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0011	1123	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0012	1122	1	0	0	0	0	1	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0013	1123	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0014	1122	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0015	1123	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0016	1121	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0017	1122	1	0	0	1	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR173_chrX_53043789_53085615	0/0	c0018	1123	1	1	0	0	0	0	copy fasta	GPR173	chrX	53043789	53085615
GPR174_chrX_79139688_79180318	1/0	c0001	1002	164	41	28	71	6	17	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/1	c0002	1002	145	26	25	73	7	13	copy fasta	GPR174	chrX	79139688	79180318