JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR174_chrX_79139688_79180318	0/0	c0003	1002	3	3	0	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	c0004	1002	1	0	1	0	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	c0005	1001	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR174_chrX_79139688_79180318	0/0	c0006	1002	1	0	0	1	0	0	copy fasta	GPR174	chrX	79139688	79180318
GPR176_chr15_39794008_39925266	1/1	c0001	1548	299	79	53	132	6	27	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	c0002	1548	4	4	0	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	c0003	1548	4	4	0	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	c0004	1548	2	0	0	2	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	c0005	1548	2	1	0	0	0	1	copy fasta	GPR176	chr15	39794008	39925266
GPR176_chr15_39794008_39925266	0/0	c0006	1548	1	0	1	0	0	0	copy fasta	GPR176	chr15	39794008	39925266
GPR179_chr17_38319571_38348956	0/1	c0001	7104	155	10	37	77	10	20	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0002	7104	47	18	2	25	0	2	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0003	7104	11	11	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0004	7104	8	3	0	0	0	5	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0005	7104	8	1	6	0	1	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0006	7104	6	6	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0007	7104	5	5	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0008	7104	5	0	0	5	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0009	7104	5	0	0	5	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0010	7104	4	0	4	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0011	7104	4	4	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0012	7104	4	2	1	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0013	7104	3	3	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0014	7104	3	0	0	3	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0015	7104	3	0	0	3	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0016	7104	3	0	0	0	3	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0017	7104	3	1	2	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0018	7104	2	1	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0019	7104	2	0	0	0	2	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0020	7104	2	2	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0021	7104	2	1	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0022	7104	2	2	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0023	7104	2	0	0	2	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0024	7104	2	2	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0025	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0026	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0027	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0028	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0029	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0030	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0031	7104	1	0	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0032	7104	1	0	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0033	7104	1	0	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0034	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0035	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0036	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0037	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0038	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0039	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0040	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956