JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR179_chr17_38319571_38348956	0/0	c0041	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0042	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0043	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0044	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0045	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0046	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0047	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0048	7077	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0049	7104	1	0	0	0	0	1	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0050	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0051	7104	1	0	0	0	0	1	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0052	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0053	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0054	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0055	7104	1	0	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0056	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0057	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0058	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0059	7104	1	0	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0060	7104	1	0	1	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0061	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0062	7104	1	0	0	0	0	1	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0063	7104	1	0	0	0	0	1	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0064	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0065	7104	1	0	0	0	0	1	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0066	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0067	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0068	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0069	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0070	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0071	7104	1	1	0	0	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR179_chr17_38319571_38348956	0/0	c0072	7104	1	0	0	1	0	0	copy fasta	GPR179	chr17	38319571	38348956
GPR17_chr2_127641153_127657639	1/1	c0001	1020	402	83	81	173	16	47	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	c0002	1020	6	6	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	c0003	1020	4	4	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	c0004	1020	2	0	0	2	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	c0005	1020	1	1	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	c0006	1020	1	0	0	0	0	1	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	c0007	1020	1	0	1	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	c0008	1020	1	0	1	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	c0009	1020	1	1	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	c0010	1020	1	1	0	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	c0011	1020	1	0	0	1	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR17_chr2_127641153_127657639	0/0	c0012	1020	1	0	1	0	0	0	copy fasta	GPR17	chr2	127641153	127657639
GPR180_chr13_94596857_94639661	1/0	c0001	1323	167	74	31	37	8	16	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/1	c0002	1323	88	15	7	43	6	16	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	c0003	1323	62	1	18	34	2	7	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	c0004	1323	21	0	6	15	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	c0005	1323	2	0	0	2	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	c0006	1323	1	0	1	0	0	0	copy fasta	GPR180	chr13	94596857	94639661