JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR180_chr13_94596857_94639661	0/0	c0007	1323	1	0	1	0	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	c0008	1323	1	0	0	0	0	1	copy fasta	GPR180	chr13	94596857	94639661
GPR180_chr13_94596857_94639661	0/0	c0009	1323	1	0	0	1	0	0	copy fasta	GPR180	chr13	94596857	94639661
GPR182_chr12_56989492_57003447	1/1	c0001	1215	243	63	54	101	7	16	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	c0002	1215	68	13	13	29	5	8	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	c0003	1215	7	7	0	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	c0004	1215	2	2	0	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	c0005	1215	2	2	0	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	c0006	1215	1	1	0	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR182_chr12_56989492_57003447	0/0	c0007	1215	1	0	1	0	0	0	copy fasta	GPR182	chr12	56989492	57003447
GPR183_chr13_99289539_99312399	1/1	c0001	1086	345	72	55	175	13	28	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	c0002	1086	58	13	18	12	3	12	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	c0003	1086	41	4	7	29	0	1	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	c0004	1086	2	0	0	0	0	2	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	c0005	1086	2	2	0	0	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	c0006	1086	1	1	0	0	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	c0007	1086	1	1	0	0	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	c0008	1086	1	1	0	0	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	c0009	1086	1	0	0	1	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	c0010	1086	1	0	0	0	0	1	copy fasta	GPR183	chr13	99289539	99312399
GPR183_chr13_99289539_99312399	0/0	c0011	1086	1	0	0	1	0	0	copy fasta	GPR183	chr13	99289539	99312399
GPR18_chr13_99249739_99263379	1/1	c0001	996	379	84	61	185	12	35	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	c0002	996	35	3	13	12	1	6	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	c0003	996	4	0	0	0	0	4	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	c0004	996	3	3	0	0	0	0	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	c0005	996	2	2	0	0	0	0	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	c0006	996	1	0	0	0	1	0	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	c0007	996	1	1	0	0	0	0	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	c0008	996	1	0	0	1	0	0	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	c0009	996	1	0	0	0	0	1	copy fasta	GPR18	chr13	99249739	99263379
GPR18_chr13_99249739_99263379	0/0	c0010	996	1	1	0	0	0	0	copy fasta	GPR18	chr13	99249739	99263379
GPR19_chr12_12655890_12701183	0/1	c0001	1248	350	53	70	171	14	41	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	1/0	c0002	1248	21	10	7	2	0	1	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	c0003	1248	10	7	0	3	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	c0004	1248	8	0	1	7	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	c0005	1248	6	6	0	0	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	c0006	1248	6	6	0	0	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	c0007	1248	4	4	0	0	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	c0008	1248	3	3	0	0	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	c0009	1248	1	1	0	0	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	c0010	1248	1	1	0	0	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	c0011	1248	1	1	0	0	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR19_chr12_12655890_12701183	0/0	c0012	1248	1	0	0	1	0	0	copy fasta	GPR19	chr12	12655890	12701183
GPR20_chr8_141351470_141372286	0/1	c0001	1077	186	18	44	89	8	26	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0002	1077	110	10	11	76	0	13	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0003	1077	44	31	8	0	0	5	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0004	1077	29	23	3	0	1	2	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0005	1077	15	9	4	0	1	1	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0006	1077	5	0	1	3	1	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0007	1077	4	0	0	4	0	0	copy fasta	GPR20	chr8	141351470	141372286