JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR20_chr8_141351470_141372286	0/0	c0008	1077	1	0	0	0	1	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0009	1077	1	0	0	1	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0010	1077	1	0	0	0	0	1	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0011	1077	1	1	0	0	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0012	1077	1	0	1	0	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0013	1077	1	1	0	0	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0014	1077	1	0	0	1	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR20_chr8_141351470_141372286	0/0	c0015	1077	1	1	0	0	0	0	copy fasta	GPR20	chr8	141351470	141372286
GPR21_chr9_123028667_123040665	1/1	c0001	1050	346	81	64	154	13	32	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	c0002	1050	4	3	1	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	c0003	1050	1	0	0	1	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	c0004	1050	1	0	0	0	1	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	c0005	1050	1	0	0	1	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	c0006	1050	1	0	1	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	c0007	1050	1	0	0	0	0	1	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	c0008	1050	1	1	0	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	c0009	1050	1	0	0	0	0	1	copy fasta	GPR21	chr9	123028667	123040665
GPR21_chr9_123028667_123040665	0/0	c0010	1050	1	1	0	0	0	0	copy fasta	GPR21	chr9	123028667	123040665
GPR22_chr7_107465057_107480684	1/1	c0001	1302	406	96	68	182	18	40	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	c0002	1302	2	2	0	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	c0003	1302	1	0	0	1	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	c0004	1302	1	1	0	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	c0005	1302	1	0	0	1	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR22_chr7_107465057_107480684	0/0	c0006	1302	1	1	0	0	0	0	copy fasta	GPR22	chr7	107465057	107480684
GPR25_chr1_200867981_200879178	1/1	c0001	1086	424	93	74	197	16	42	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	c0002	1086	4	1	2	0	0	1	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	c0003	1086	1	0	0	1	0	0	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	c0004	1086	1	1	0	0	0	0	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	c0005	1086	1	0	0	1	0	0	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	c0006	1086	1	0	0	1	0	0	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	c0007	1086	1	1	0	0	0	0	copy fasta	GPR25	chr1	200867981	200879178
GPR25_chr1_200867981_200879178	0/0	c0008	1086	1	0	0	0	0	1	copy fasta	GPR25	chr1	200867981	200879178
GPR26_chr10_123661355_123702399	0/1	c0001	1014	217	54	44	82	7	29	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	c0002	1014	176	30	35	84	9	18	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	c0003	1014	8	8	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	c0004	1014	2	2	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	c0005	1014	2	2	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	c0006	1014	1	0	0	1	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	c0007	1014	1	0	0	1	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	c0008	1014	1	0	0	0	0	1	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	c0009	1014	1	1	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	1/0	c0010	1014	1	0	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	c0011	1014	1	0	1	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR26_chr10_123661355_123702399	0/0	c0012	1014	1	1	0	0	0	0	copy fasta	GPR26	chr10	123661355	123702399
GPR27_chr3_71748855_71761496	1/1	c0001	1128	411	89	72	184	16	48	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	c0002	1128	3	1	2	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	c0003	1128	1	0	1	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	c0004	1128	1	1	0	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	c0005	1128	1	1	0	0	0	0	copy fasta	GPR27	chr3	71748855	71761496
GPR27_chr3_71748855_71761496	0/0	c0006	1128	1	0	1	0	0	0	copy fasta	GPR27	chr3	71748855	71761496