JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR31_chr6_167150247_167162980	0/1	c0001	960	408	83	75	200	15	34	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0002	960	6	2	2	0	1	1	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0003	961	6	2	1	3	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	1/0	c0004	960	6	5	0	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0005	960	3	0	0	0	0	3	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0006	960	3	0	1	0	0	2	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0007	960	2	0	0	0	0	2	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0008	960	1	0	0	1	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0009	960	1	1	0	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0010	960	1	0	0	1	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0011	960	1	0	1	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0012	960	1	0	0	1	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0013	960	1	1	0	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0014	960	1	1	0	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR31_chr6_167150247_167162980	0/0	c0015	960	1	1	0	0	0	0	copy fasta	GPR31	chr6	167150247	167162980
GPR32_chr19_50765464_50776732	1/1	c0001	1071	386	92	75	162	11	44	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	c0002	1071	16	0	3	10	1	2	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	c0003	1071	5	0	3	0	2	0	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	c0004	1071	4	4	0	0	0	0	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	c0005	1071	3	3	0	0	0	0	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	c0006	1071	2	1	1	0	0	0	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	c0007	1071	2	0	0	2	0	0	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	c0008	1071	1	0	0	1	0	0	copy fasta	GPR32	chr19	50765464	50776732
GPR32_chr19_50765464_50776732	0/0	c0009	1071	1	0	0	1	0	0	copy fasta	GPR32	chr19	50765464	50776732
GPR33_chr14_31477875_31493039	0/0	c0001	1002	395	75	60	203	15	42	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	c0002	1002	20	2	0	16	0	2	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	c0003	1002	16	3	9	1	1	2	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	c0004	1002	7	7	0	0	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	c0005	1002	2	2	0	0	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	1/0	c0006	1002	1	0	0	0	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	c0007	1002	1	0	0	0	0	1	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	c0008	1002	1	0	0	1	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	c0009	1002	1	1	0	0	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	c0010	1002	1	0	0	1	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	c0011	1002	1	0	1	0	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/1	c0012	1002	1	0	0	0	0	0	copy fasta	GPR33	chr14	31477875	31493039
GPR33_chr14_31477875_31493039	0/0	c0013	1002	1	0	0	0	0	1	copy fasta	GPR33	chr14	31477875	31493039
GPR34_chrX_41683973_41702275	1/1	c0001	1146	294	70	50	131	11	30	copy fasta	GPR34	chrX	41683973	41702275
GPR34_chrX_41683973_41702275	0/0	c0002	1146	2	2	0	0	0	0	copy fasta	GPR34	chrX	41683973	41702275
GPR34_chrX_41683973_41702275	0/0	c0003	1146	1	0	0	1	0	0	copy fasta	GPR34	chrX	41683973	41702275
GPR35_chr2_240620480_240638159	0/0	c0001	930	169	5	24	110	5	25	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	1/0	c0002	930	127	49	36	34	4	3	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0003	930	52	18	10	13	3	8	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/1	c0004	930	13	0	1	3	0	8	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0005	930	9	9	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0006	930	6	6	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0007	930	4	0	0	4	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0008	930	3	2	1	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0009	930	3	3	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0010	930	2	0	0	2	0	0	copy fasta	GPR35	chr2	240620480	240638159