JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR35_chr2_240620480_240638159	0/0	c0011	930	2	2	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0012	930	2	1	1	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0013	930	1	0	0	0	1	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0014	930	1	0	0	0	0	1	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0015	930	1	0	0	0	0	1	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0016	930	1	1	0	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0017	930	1	0	0	0	1	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0018	930	1	0	0	0	0	1	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0019	930	1	0	1	0	0	0	copy fasta	GPR35	chr2	240620480	240638159
GPR35_chr2_240620480_240638159	0/0	c0020	930	1	0	0	0	0	1	copy fasta	GPR35	chr2	240620480	240638159
GPR37L1_chr1_202117917_202138592	0/1	c0001	1446	207	42	48	72	13	31	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0002	1446	125	24	20	72	2	7	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	1/0	c0003	1446	77	18	12	42	2	2	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0004	1446	11	11	0	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0005	1446	3	2	1	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0006	1446	2	1	0	0	1	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0007	1446	1	1	0	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0008	1446	1	0	1	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0009	1446	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0010	1446	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0011	1446	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0012	1446	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0013	1446	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0014	1446	1	1	0	0	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37L1_chr1_202117917_202138592	0/0	c0015	1446	1	0	0	1	0	0	copy fasta	GPR37L1	chr1	202117917	202138592
GPR37_chr7_124738885_124770792	0/1	c0001	1842	193	14	34	118	7	19	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0002	1842	114	11	19	65	5	14	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	1/0	c0003	1842	55	37	12	1	4	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0004	1842	26	16	0	0	2	8	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0005	1842	2	1	0	0	0	1	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0006	1842	2	0	1	0	0	1	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0007	1842	2	0	0	2	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0008	1842	2	2	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0009	1842	2	0	0	2	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0010	1842	2	0	0	2	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0011	1842	1	0	1	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0012	1842	1	0	1	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0013	1842	1	1	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0014	1842	1	0	0	0	0	1	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0015	1842	1	0	1	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0016	1842	1	0	0	1	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0017	1842	1	1	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0018	1842	1	1	0	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0019	1842	1	0	1	0	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR37_chr7_124738885_124770792	0/0	c0020	1842	1	0	0	1	0	0	copy fasta	GPR37	chr7	124738885	124770792
GPR39_chr2_132411805_132651582	0/0	c0001	1362	109	26	21	41	6	15	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	c0002	1362	51	15	9	15	4	8	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	c0003	1362	16	12	1	2	0	1	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	c0004	1365	10	8	0	2	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	c0005	1362	8	7	1	0	0	0	copy fasta	GPR39	chr2	132411805	132651582