JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR39_chr2_132411805_132651582	0/0	c0006	1362	4	4	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	c0007	1362	3	0	0	1	0	2	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	c0008	1362	2	2	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	c0009	1362	1	1	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	c0010	1365	1	1	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	c0011	1362	1	1	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	c0012	1365	1	1	0	0	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR39_chr2_132411805_132651582	0/0	c0013	1362	1	0	0	1	0	0	copy fasta	GPR39	chr2	132411805	132651582
GPR3_chr1_27387622_27400814	1/1	c0001	993	349	87	56	144	14	46	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	c0002	993	2	0	2	0	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	c0003	993	2	2	0	0	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	c0004	993	2	0	2	0	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR3_chr1_27387622_27400814	0/0	c0005	993	1	1	0	0	0	0	copy fasta	GPR3	chr1	27387622	27400814
GPR42_chr19_35366068_35377962	0/0	c0001	1041	163	49	21	71	5	17	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0002	1041	53	14	0	37	0	2	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	1/0	c0003	1041	37	2	11	20	2	1	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0004	1041	36	4	12	5	5	10	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0005	1041	34	1	16	12	2	3	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0006	1041	12	6	3	0	2	1	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0007	1041	7	0	2	1	1	3	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0008	1041	5	2	2	0	0	1	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0009	1041	5	5	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0010	1041	4	4	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0011	1041	4	0	0	4	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0012	1041	4	0	0	4	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0013	1041	3	0	0	3	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0014	1041	3	0	3	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0015	1041	2	2	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0016	1041	2	0	2	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0017	1041	2	2	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0018	1041	2	1	1	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0019	1041	2	0	1	0	1	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0020	1041	2	0	1	0	0	1	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0021	1041	2	2	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0022	1041	2	0	0	2	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0023	1041	2	0	0	2	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0024	1041	1	0	0	0	0	1	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0025	1041	1	0	1	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0026	1041	1	1	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0027	13498	1	0	1	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0028	1041	1	1	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0029	1041	1	0	1	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0030	1041	1	1	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0031	1041	1	0	0	1	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0032	1041	1	0	0	1	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0033	1041	1	0	0	1	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR42_chr19_35366068_35377962	0/0	c0034	1041	1	1	0	0	0	0	copy fasta	GPR42	chr19	35366068	35377962
GPR45_chr2_105236743_105248467	1/1	c0001	1119	370	79	61	180	10	38	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	c0002	1119	22	4	9	6	2	1	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	c0003	1119	6	6	0	0	0	0	copy fasta	GPR45	chr2	105236743	105248467