JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR45_chr2_105236743_105248467	0/0	c0004	1119	5	5	0	0	0	0	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	c0005	1119	3	0	1	0	2	0	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	c0006	1119	2	0	2	0	0	0	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	c0007	1119	1	0	0	0	0	1	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	c0008	1119	1	1	0	0	0	0	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	c0009	1119	1	1	0	0	0	0	copy fasta	GPR45	chr2	105236743	105248467
GPR45_chr2_105236743_105248467	0/0	c0010	1119	1	0	1	0	0	0	copy fasta	GPR45	chr2	105236743	105248467
GPR4_chr19_45584764_45607212	1/1	c0001	1089	383	87	65	179	12	38	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	c0002	1089	52	5	18	15	4	10	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	c0003	1089	8	0	0	8	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	c0004	1089	2	2	0	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	c0005	1089	1	0	0	1	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	c0006	1089	1	0	1	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	c0007	1089	1	1	0	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	c0008	1089	1	0	0	1	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR4_chr19_45584764_45607212	0/0	c0009	1089	1	1	0	0	0	0	copy fasta	GPR4	chr19	45584764	45607212
GPR50_chrX_151171584_151186465	1/0	c0001	1854	179	32	11	118	0	17	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0002	1842	75	10	29	24	6	6	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/1	c0003	1854	38	9	13	2	4	9	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0004	1842	30	14	2	12	2	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0005	1842	18	10	6	1	1	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0006	1854	4	3	1	0	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0007	1821	3	0	0	3	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0008	1842	2	0	0	0	0	2	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0009	1845	1	0	0	1	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0010	1848	1	0	0	1	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0011	1842	1	1	0	0	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0012	1854	1	1	0	0	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0013	1841	1	0	0	1	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0014	1854	1	1	0	0	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR50_chrX_151171584_151186465	0/0	c0015	1843	1	0	0	1	0	0	copy fasta	GPR50	chrX	151171584	151186465
GPR52_chr1_174442964_174454545	1/1	c0001	1086	408	89	66	193	16	42	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	c0002	1086	3	0	0	3	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	c0003	1086	2	1	1	0	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	c0004	1086	1	0	0	0	0	1	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	c0005	1086	1	0	0	0	0	1	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	c0006	1086	1	1	0	0	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	c0007	1086	1	0	0	1	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	c0008	1086	1	1	0	0	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	c0009	1086	1	0	1	0	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR52_chr1_174442964_174454545	0/0	c0010	1086	1	0	0	1	0	0	copy fasta	GPR52	chr1	174442964	174454545
GPR55_chr2_230902328_230930242	1/0	c0001	960	181	7	34	105	10	24	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	c0002	960	93	39	5	39	2	8	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	c0003	960	44	12	14	9	4	5	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	c0004	960	32	27	3	1	0	1	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/1	c0005	960	28	0	9	16	0	2	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	c0006	960	11	11	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	c0007	960	3	0	2	0	0	1	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	c0008	960	2	2	0	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	c0009	960	1	0	0	1	0	0	copy fasta	GPR55	chr2	230902328	230930242