Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AJM1_chr9_136837478_136853801	0/0	c0013	2931	1	0	0	0	0	1	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0014	2931	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0015	2931	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0016	2931	1	1	0	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0017	2931	1	1	0	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0018	2931	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0019	2931	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	c0020	2931	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJUBA_chr14_22966177_22987551	1/1	c0001	1617	306	77	69	102	14	42	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	c0002	1617	19	18	1	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	c0003	1617	4	4	0	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	c0004	1617	2	0	0	0	2	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	c0005	1617	2	0	2	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	c0006	1617	1	1	0	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AK1_chr9_127861486_127882675	0/1	c0001	585	392	81	73	181	17	39	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	c0002	585	12	0	2	0	1	9	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	c0003	585	9	8	1	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	c0004	585	5	3	0	1	0	1	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	c0005	585	4	4	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	c0006	585	1	1	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	1/0	c0007	585	1	0	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	c0008	585	1	1	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	c0009	585	1	0	0	0	0	1	copy fasta	AK1	chr9	127861486	127882675
AK2_chr1_33002986_33041883	1/1	c0001	720	344	94	54	152	16	26	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	c0002	720	2	0	2	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	c0003	720	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	c0004	720	1	1	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	c0005	720	1	1	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	c0006	720	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883
AK3_chr9_4704556_4746202	1/1	c0001	684	452	89	83	214	16	48	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	c0002	684	4	4	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	c0003	684	3	2	1	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	c0004	684	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	c0005	684	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	c0006	684	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK4_chr1_65143203_65237145	1/1	c0001	672	118	26	31	47	6	6	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	c0002	672	89	8	18	52	2	9	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	c0003	672	38	15	2	20	0	1	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	c0004	672	35	26	2	5	2	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	c0005	672	9	8	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	c0006	672	8	5	3	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	c0007	672	1	0	0	1	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	c0008	672	1	0	0	1	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	c0009	672	1	0	1	0	0	0	copy fasta	AK4	chr1	65143203	65237145
AK5_chr1_77277019_77564966	0/1	c0001	1692	154	22	32	75	10	14	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	1/0	c0002	1689	89	37	8	34	1	8	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	c0003	1692	15	3	2	8	1	1	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	c0004	1689	15	2	2	10	0	1	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	c0005	1689	4	4	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	c0006	1689	4	4	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966