JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR55_chr2_230902328_230930242	0/0	c0010	960	1	0	0	1	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	c0011	960	1	0	0	0	0	1	copy fasta	GPR55	chr2	230902328	230930242
GPR55_chr2_230902328_230930242	0/0	c0012	960	1	0	1	0	0	0	copy fasta	GPR55	chr2	230902328	230930242
GPR61_chr1_109534872_109552260	1/1	c0001	1356	267	71	49	101	11	33	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	c0002	1356	105	16	11	65	1	12	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	c0003	1356	4	0	4	0	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	c0004	1356	3	3	0	0	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	c0005	1356	3	0	0	3	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	c0006	1356	1	0	0	0	0	1	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	c0007	1356	1	0	0	1	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	c0008	1356	1	0	1	0	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR61_chr1_109534872_109552260	0/0	c0009	1356	1	0	1	0	0	0	copy fasta	GPR61	chr1	109534872	109552260
GPR62_chr3_51950381_51962499	0/1	c0001	1107	287	50	51	132	9	44	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	c0002	1107	43	24	2	15	0	2	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	c0003	1107	10	9	1	0	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	c0004	1107	5	0	4	0	1	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	c0005	1107	1	1	0	0	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	1/0	c0006	1107	1	0	0	0	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR62_chr3_51950381_51962499	0/0	c0007	1107	1	0	0	1	0	0	copy fasta	GPR62	chr3	51950381	51962499
GPR63_chr6_96789125_96842477	1/1	c0001	1260	358	87	58	171	11	29	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	c0002	1260	20	5	7	0	2	6	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	c0003	1260	5	0	4	0	1	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	c0004	1260	3	0	0	3	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	c0005	1260	2	2	0	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	c0006	1260	1	0	0	1	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	c0007	1260	1	0	0	0	0	1	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	c0008	1260	1	0	0	1	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR63_chr6_96789125_96842477	0/0	c0009	1260	1	0	1	0	0	0	copy fasta	GPR63	chr6	96789125	96842477
GPR65_chr14_88000135_88019811	0/0	c0001	1014	254	50	41	130	11	22	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	c0002	1014	93	21	15	45	1	11	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	1/1	c0003	1014	49	18	14	5	4	6	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	c0004	1014	3	0	0	0	0	3	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	c0005	1014	1	0	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	c0006	1014	1	1	0	0	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR65_chr14_88000135_88019811	0/0	c0007	1014	1	0	0	1	0	0	copy fasta	GPR65	chr14	88000135	88019811
GPR68_chr14_91227532_91249704	1/1	c0001	1098	330	54	67	165	12	30	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	c0002	1098	67	32	4	22	0	9	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	c0003	1098	14	1	1	6	0	6	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	c0004	1098	2	2	0	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	c0005	1098	2	0	2	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	c0006	1098	1	0	1	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	c0007	1098	1	0	1	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	c0008	1098	1	1	0	0	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	c0009	1098	1	0	0	0	0	1	copy fasta	GPR68	chr14	91227532	91249704
GPR68_chr14_91227532_91249704	0/0	c0010	1098	1	0	0	1	0	0	copy fasta	GPR68	chr14	91227532	91249704
GPR6_chr6_109973311_109985720	1/1	c0001	1089	437	84	83	204	18	46	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	c0002	1089	12	12	0	0	0	0	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	c0003	1089	1	0	0	1	0	0	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	c0004	1089	1	0	0	1	0	0	copy fasta	GPR6	chr6	109973311	109985720
GPR6_chr6_109973311_109985720	0/0	c0005	1089	1	0	1	0	0	0	copy fasta	GPR6	chr6	109973311	109985720