JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR75_chr2_53847912_53864967	1/1	c0001	1623	410	92	66	199	15	36	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0002	1623	6	0	4	0	1	1	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0003	1623	3	3	0	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0004	1623	3	0	0	3	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0005	1623	2	0	0	2	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0006	1623	1	0	1	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0007	1623	1	1	0	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0008	1623	1	0	0	1	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0009	1623	1	1	0	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0010	1623	1	0	0	0	0	1	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0011	1623	1	0	0	1	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0012	1623	1	0	1	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR75_chr2_53847912_53864967	0/0	c0013	1623	1	1	0	0	0	0	copy fasta	GPR75	chr2	53847912	53864967
GPR78_chr4_8575392_8595023	1/1	c0001	1092	340	65	61	177	13	22	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0002	1092	42	18	2	14	4	4	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0003	1092	29	1	17	1	1	9	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0004	1093	19	0	0	17	0	2	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0005	1092	5	4	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0006	1092	4	3	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0007	1092	3	0	1	0	0	2	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0008	1092	2	0	0	0	0	2	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0009	1092	2	0	0	0	0	2	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0010	1092	2	1	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0011	1092	2	0	0	2	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0012	1092	1	0	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0013	1092	1	0	0	0	0	1	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0014	1092	1	1	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0015	1092	1	1	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0016	1092	1	0	0	1	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0017	1092	1	0	0	1	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0018	1092	1	1	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0019	1092	1	0	0	1	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0020	1092	1	1	0	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0021	1092	1	0	1	0	0	0	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0022	1092	1	0	0	0	0	1	copy fasta	GPR78	chr4	8575392	8595023
GPR78_chr4_8575392_8595023	0/0	c0023	1092	1	0	0	0	0	1	copy fasta	GPR78	chr4	8575392	8595023
GPR82_chrX_41719181_41735130	0/1	c0001	1011	253	63	39	120	10	20	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	1/0	c0002	1011	34	7	7	11	3	5	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	c0003	1011	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	c0004	1011	1	0	0	1	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	c0005	1011	1	1	0	0	0	0	copy fasta	GPR82	chrX	41719181	41735130
GPR82_chrX_41719181_41735130	0/0	c0006	1011	1	0	0	0	0	1	copy fasta	GPR82	chrX	41719181	41735130
GPR83_chr11_94372316_94406419	1/0	c0001	1272	357	71	67	168	13	37	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/1	c0002	1272	40	2	3	25	0	9	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	c0003	1272	18	17	1	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	c0004	1272	3	0	1	1	1	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	c0005	1272	2	1	0	0	0	1	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	c0006	1272	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	c0007	1272	1	0	0	0	0	1	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	c0008	1272	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419