JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPR83_chr11_94372316_94406419	0/0	c0009	1272	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	c0010	1272	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	c0011	1272	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	c0012	1272	1	1	0	0	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR83_chr11_94372316_94406419	0/0	c0013	1272	1	0	0	1	0	0	copy fasta	GPR83	chr11	94372316	94406419
GPR84_chr12_54357445_54369486	1/1	c0001	1191	396	94	79	170	14	37	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	c0002	1191	10	0	0	10	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	c0003	1191	5	0	0	5	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	c0004	1191	2	0	0	2	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	c0005	1191	1	0	0	1	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	c0006	1191	1	1	0	0	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	c0007	1191	1	0	0	0	0	1	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	c0008	1191	1	1	0	0	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	c0009	1191	1	0	1	0	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	c0010	1191	1	0	0	1	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR84_chr12_54357445_54369486	0/0	c0011	1191	1	0	0	1	0	0	copy fasta	GPR84	chr12	54357445	54369486
GPR85_chr7_113077285_113091827	0/1	c0001	1113	334	71	72	135	16	39	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	1/0	c0002	1113	37	10	8	5	2	11	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	c0003	1113	8	8	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR85_chr7_113077285_113091827	0/0	c0004	1113	5	5	0	0	0	0	copy fasta	GPR85	chr7	113077285	113091827
GPR87_chr3_151289086_151321820	0/0	c0001	1077	186	35	39	87	2	23	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/1	c0002	1077	120	43	18	44	4	10	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	1/0	c0003	1077	117	16	13	73	6	8	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	c0004	1077	15	2	4	1	5	3	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	c0005	1077	2	2	0	0	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	c0006	1077	1	0	1	0	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	c0007	1077	1	0	0	1	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	c0008	1077	1	0	0	0	1	0	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	c0009	1077	1	0	0	0	0	1	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	c0010	1077	1	0	0	0	0	1	copy fasta	GPR87	chr3	151289086	151321820
GPR87_chr3_151289086_151321820	0/0	c0011	1077	1	0	1	0	0	0	copy fasta	GPR87	chr3	151289086	151321820
GPR88_chr1_100533139_100547021	0/1	c0001	1155	241	15	40	141	10	34	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	1/0	c0002	1155	183	77	31	56	4	14	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	c0003	1155	1	0	0	1	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR88_chr1_100533139_100547021	0/0	c0004	1155	1	0	1	0	0	0	copy fasta	GPR88	chr1	100533139	100547021
GPR89A_chr1_145602988_145675650	1/1	c0001	1368	253	57	46	108	10	30	copy fasta	GPR89A	chr1	145602988	145675650
GPR89A_chr1_145602988_145675650	0/0	c0002	1368	16	16	0	0	0	0	copy fasta	GPR89A	chr1	145602988	145675650
GPR89A_chr1_145602988_145675650	0/0	c0003	1368	3	0	0	3	0	0	copy fasta	GPR89A	chr1	145602988	145675650
GPR89A_chr1_145602988_145675650	0/0	c0004	1368	1	1	0	0	0	0	copy fasta	GPR89A	chr1	145602988	145675650
GPR89A_chr1_145602988_145675650	0/0	c0005	1368	1	0	0	1	0	0	copy fasta	GPR89A	chr1	145602988	145675650
GPR89B_chr1_147923420_147998592	1/1	c0001	1368	217	54	43	90	9	19	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	c0002	1368	29	6	2	12	1	8	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	c0003	1368	21	7	3	11	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	c0004	1368	3	3	0	0	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	c0005	1368	1	1	0	0	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	c0006	1368	1	1	0	0	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	c0007	1368	1	0	0	1	0	0	copy fasta	GPR89B	chr1	147923420	147998592
GPR89B_chr1_147923420_147998592	0/0	c0008	1368	1	0	0	0	0	1	copy fasta	GPR89B	chr1	147923420	147998592
GPRASP1_chrX_102646483_102664083	1/1	c0001	4188	245	50	42	121	11	19	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0002	4188	46	16	2	20	0	8	copy fasta	GPRASP1	chrX	102646483	102664083