JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPRASP1_chrX_102646483_102664083	0/0	c0003	4188	9	0	1	8	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0004	4188	5	0	3	0	2	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0005	4188	4	4	0	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0006	4188	3	3	0	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0007	4188	2	2	0	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0008	4188	2	0	0	0	0	2	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0009	4188	1	1	0	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0010	4188	1	0	0	0	0	1	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0011	4188	1	0	0	1	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0012	4188	1	0	1	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0013	4188	1	0	0	1	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0014	4188	1	1	0	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP1_chrX_102646483_102664083	0/0	c0015	4188	1	1	0	0	0	0	copy fasta	GPRASP1	chrX	102646483	102664083
GPRASP2_chrX_102707448_102722733	1/1	c0001	2517	270	55	46	129	11	27	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	c0002	2517	10	2	1	7	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	c0003	2517	4	4	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	c0004	2505	3	3	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	c0005	2515	1	1	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	c0006	2518	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	c0007	2516	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	c0008	2517	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	c0009	2510	1	1	0	0	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP2_chrX_102707448_102722733	0/0	c0010	2516	1	0	0	1	0	0	copy fasta	GPRASP2	chrX	102707448	102722733
GPRASP3_chrX_102715743_102758540	1/1	c0001	1644	266	63	39	127	8	27	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	c0002	1644	4	4	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	c0003	1644	3	0	2	0	1	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	c0004	1644	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	c0005	1644	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	c0006	1644	1	1	0	0	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	c0007	1644	1	0	0	0	0	1	copy fasta	GPRASP3	chrX	102715743	102758540
GPRASP3_chrX_102715743_102758540	0/0	c0008	1645	1	0	0	1	0	0	copy fasta	GPRASP3	chrX	102715743	102758540
GPRC5A_chr12_12886562_12922937	1/1	c0001	1074	192	62	45	58	4	21	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0002	1074	158	4	28	101	4	21	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0003	1074	22	19	0	0	0	3	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0004	1074	7	5	2	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0005	1074	3	2	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0006	1074	3	0	0	3	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0007	1074	2	2	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0008	1074	2	0	0	2	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0009	1074	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0010	1074	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0011	1074	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0012	1074	1	0	1	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0013	1074	1	1	0	0	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0014	1074	1	0	0	1	0	0	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5A_chr12_12886562_12922937	0/0	c0015	1074	1	0	0	0	0	1	copy fasta	GPRC5A	chr12	12886562	12922937
GPRC5B_chr16_19851691_19889848	1/1	c0001	1212	371	72	67	176	11	43	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0002	1212	14	7	4	0	3	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0003	1212	4	4	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0004	1212	4	0	0	4	0	0	copy fasta	GPRC5B	chr16	19851691	19889848