JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPRC5B_chr16_19851691_19889848	0/0	c0005	1212	3	3	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0006	1212	3	3	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0007	1212	2	0	0	2	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0008	1212	1	0	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0009	1212	1	0	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0010	1212	1	1	0	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0011	1188	1	0	1	0	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0012	1212	1	0	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0013	1212	1	0	0	0	0	1	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5B_chr16_19851691_19889848	0/0	c0014	1212	1	0	0	1	0	0	copy fasta	GPRC5B	chr16	19851691	19889848
GPRC5C_chr17_74427088_74452429	1/1	c0001	1326	320	89	41	142	12	34	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	c0002	1326	6	5	1	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	c0003	1326	2	0	2	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	c0004	1326	2	0	0	2	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	c0005	1326	2	2	0	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	c0006	1326	1	0	0	1	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	c0007	1326	1	1	0	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	c0008	1326	1	0	0	1	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	c0009	1326	1	0	0	1	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	c0010	1326	1	0	0	1	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5C_chr17_74427088_74452429	0/0	c0011	1326	1	1	0	0	0	0	copy fasta	GPRC5C	chr17	74427088	74452429
GPRC5D_chr12_12935575_12957170	1/0	c0001	1038	293	86	53	118	9	26	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/1	c0002	1038	75	1	19	31	8	15	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	c0003	1038	27	0	6	19	1	1	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	c0004	1038	3	2	1	0	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	c0005	1038	2	0	0	0	0	2	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	c0006	1038	2	1	1	0	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	c0007	1038	1	0	0	1	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	c0008	1038	1	0	0	1	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	c0009	1038	1	0	1	0	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC5D_chr12_12935575_12957170	0/0	c0010	1038	1	0	1	0	0	0	copy fasta	GPRC5D	chr12	12935575	12957170
GPRC6A_chr6_116787085_116834083	0/0	c0001	2781	117	16	25	64	1	11	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0002	2781	116	7	16	75	4	14	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0003	2787	33	30	3	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/1	c0004	2781	29	1	8	4	5	10	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0005	2787	22	10	5	3	1	3	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0006	2781	8	5	1	0	0	2	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0007	2781	5	0	4	0	0	1	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0008	2781	5	5	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	1/0	c0009	2781	4	3	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0010	2781	4	4	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0011	2781	3	0	0	0	1	2	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0012	2781	2	0	0	0	0	2	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0013	2781	2	2	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0014	2781	2	2	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0015	2787	2	1	1	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0016	2781	1	0	0	1	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0017	2781	1	0	0	1	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0018	2781	1	0	0	1	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0019	2781	1	0	0	0	0	1	copy fasta	GPRC6A	chr6	116787085	116834083