JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPRC6A_chr6_116787085_116834083	0/0	c0020	2781	1	0	0	1	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0021	2781	1	1	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0022	2781	1	0	0	1	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0023	2787	1	0	1	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0024	2781	1	0	0	1	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0025	2787	1	1	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0026	2781	1	0	1	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0027	2781	1	0	1	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0028	2787	1	1	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRC6A_chr6_116787085_116834083	0/0	c0029	2781	1	1	0	0	0	0	copy fasta	GPRC6A	chr6	116787085	116834083
GPRIN1_chr5_176590802_176615156	0/0	c0001	3027	195	42	47	71	8	27	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0002	3003	115	20	23	56	6	10	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0003	3027	64	20	5	33	1	5	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0004	3027	4	0	2	0	1	1	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0005	3027	3	2	1	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0006	3027	3	3	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0007	3027	2	0	0	0	2	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0008	3003	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0009	3003	1	1	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0010	3003	1	0	0	0	0	1	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	1/0	c0011	3027	1	0	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0012	3027	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0013	3027	1	1	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0014	3027	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0015	3027	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0016	3027	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0017	3027	1	0	0	1	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN1_chr5_176590802_176615156	0/0	c0018	3027	1	1	0	0	0	0	copy fasta	GPRIN1	chr5	176590802	176615156
GPRIN2_chr10_46536736_46561658	0/0	c0001	1386	56	4	4	45	1	2	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/1	c0002	1377	48	1	3	40	1	2	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0003	1386	6	0	0	6	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0004	1377	6	2	0	2	0	2	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0005	1377	5	2	1	0	2	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0006	1377	4	0	0	4	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0007	1377	2	0	0	2	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0008	1386	1	0	0	0	0	1	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0009	1386	1	0	0	0	1	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0010	1386	1	1	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0011	1386	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0012	1386	1	0	0	0	1	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0013	1386	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0014	1386	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	1/0	c0015	1377	1	0	0	0	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0016	1377	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0017	1377	1	0	0	1	0	0	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN2_chr10_46536736_46561658	0/0	c0018	1377	1	0	0	0	0	1	copy fasta	GPRIN2	chr10	46536736	46561658
GPRIN3_chr4_89231383_89312800	0/0	c0001	2331	146	38	17	67	7	17	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	1/1	c0002	2331	135	19	39	59	4	12	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0003	2331	24	0	3	13	3	5	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0004	2331	9	7	2	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800