JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPRIN3_chr4_89231383_89312800	0/0	c0005	2331	4	4	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0006	2331	3	3	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0007	2331	3	3	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0008	2331	3	3	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0009	2331	2	2	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0010	2331	2	2	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0011	2331	2	0	0	0	0	2	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0012	2331	2	0	0	0	0	2	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0013	2331	2	2	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0014	2331	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0015	2331	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0016	2331	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0017	2331	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0018	2331	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0019	2331	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0020	2331	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0021	2331	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0022	2331	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0023	2331	1	0	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0024	2331	1	0	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0025	2331	1	0	0	0	1	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0026	2331	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0027	2331	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0028	2331	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0029	2331	1	0	0	1	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0030	2331	1	1	0	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0031	2331	1	0	1	0	0	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPRIN3_chr4_89231383_89312800	0/0	c0032	2331	1	0	0	0	1	0	copy fasta	GPRIN3	chr4	89231383	89312800
GPS1_chr17_82046898_82062470	1/1	c0001	1464	356	75	74	152	12	41	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0002	1464	50	10	7	24	6	3	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0003	1464	12	0	0	12	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0004	1464	11	9	2	0	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0005	1464	1	1	0	0	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0006	1464	1	1	0	0	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0007	1464	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0008	1464	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0009	1464	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0010	1464	1	0	0	0	0	1	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0011	1464	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0012	1464	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0013	1464	1	0	1	0	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0014	1464	1	0	0	0	0	1	copy fasta	GPS1	chr17	82046898	82062470
GPS1_chr17_82046898_82062470	0/0	c0015	1464	1	0	0	1	0	0	copy fasta	GPS1	chr17	82046898	82062470
GPS2_chr17_7307661_7320360	0/0	c0001	984	231	23	58	117	5	28	copy fasta	GPS2	chr17	7307661	7320360
GPS2_chr17_7307661_7320360	1/1	c0002	984	98	44	15	18	9	10	copy fasta	GPS2	chr17	7307661	7320360
GPS2_chr17_7307661_7320360	0/0	c0003	984	54	5	8	37	0	4	copy fasta	GPS2	chr17	7307661	7320360
GPS2_chr17_7307661_7320360	0/0	c0004	984	22	21	1	0	0	0	copy fasta	GPS2	chr17	7307661	7320360
GPS2_chr17_7307661_7320360	0/0	c0005	984	7	0	0	7	0	0	copy fasta	GPS2	chr17	7307661	7320360
GPS2_chr17_7307661_7320360	0/0	c0006	984	1	1	0	0	0	0	copy fasta	GPS2	chr17	7307661	7320360
GPS2_chr17_7307661_7320360	0/0	c0007	984	1	0	0	1	0	0	copy fasta	GPS2	chr17	7307661	7320360