JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPSM1_chr9_136322539_136364601	0/1	c0001	2028	259	52	36	125	13	32	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0002	2028	47	10	18	13	1	5	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	1/0	c0003	2028	26	3	17	0	1	4	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0004	2028	11	7	3	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0005	2028	9	7	2	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0006	2028	7	6	1	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0007	2028	5	0	2	0	1	2	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0008	2028	4	0	0	4	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0009	2028	4	0	0	4	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0010	2028	2	0	0	2	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0011	2028	2	0	0	2	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0012	2028	2	0	0	2	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0013	2028	2	0	1	0	0	1	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0014	2028	2	2	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0015	2028	2	2	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0016	2028	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0017	2028	1	0	0	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0018	2028	1	0	1	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0019	2028	1	0	0	0	1	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0020	2028	1	0	0	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0021	2018	1	0	0	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0022	2028	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0023	2028	1	0	0	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0024	2028	1	0	0	0	0	1	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0025	2028	1	0	1	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0026	2028	1	0	0	0	1	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0027	2028	1	0	0	1	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0028	2028	1	0	0	0	0	1	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0029	2028	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0030	2028	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM1_chr9_136322539_136364601	0/0	c0031	2028	1	1	0	0	0	0	copy fasta	GPSM1	chr9	136322539	136364601
GPSM2_chr1_108871985_108939545	1/1	c0001	2055	153	25	31	73	6	16	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0002	2052	41	16	9	9	4	3	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0003	2052	19	14	1	0	2	2	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0004	2052	18	6	0	4	0	8	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0005	2052	10	9	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0006	2052	5	5	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0007	2055	4	4	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0008	2052	3	2	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0009	2055	2	1	1	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0010	2052	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0011	2052	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0012	2055	1	0	0	1	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0013	2052	1	1	0	0	0	0	copy fasta	GPSM2	chr1	108871985	108939545
GPSM2_chr1_108871985_108939545	0/0	c0014	2055	1	0	0	0	0	1	copy fasta	GPSM2	chr1	108871985	108939545
GPSM3_chr6_32185766_32197643	0/1	c0001	483	335	66	64	163	12	29	copy fasta	GPSM3	chr6	32185766	32197643
GPSM3_chr6_32185766_32197643	0/0	c0002	483	98	26	12	40	4	16	copy fasta	GPSM3	chr6	32185766	32197643
GPSM3_chr6_32185766_32197643	0/0	c0003	483	4	0	4	0	0	0	copy fasta	GPSM3	chr6	32185766	32197643
GPSM3_chr6_32185766_32197643	0/0	c0004	483	2	2	0	0	0	0	copy fasta	GPSM3	chr6	32185766	32197643
GPSM3_chr6_32185766_32197643	0/0	c0005	483	1	0	0	1	0	0	copy fasta	GPSM3	chr6	32185766	32197643