JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPSM3_chr6_32185766_32197643	0/0	c0006	483	1	0	0	0	0	1	copy fasta	GPSM3	chr6	32185766	32197643
GPT2_chr16_46879362_46936289	1/1	c0001	1572	168	59	36	34	12	25	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	c0002	1572	12	11	1	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	c0003	1572	4	4	0	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	c0004	1572	3	0	3	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	c0005	1572	3	1	2	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	c0006	1572	1	0	0	1	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	c0007	1572	1	0	0	1	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	c0008	1572	1	0	0	0	0	1	copy fasta	GPT2	chr16	46879362	46936289
GPT2_chr16_46879362_46936289	0/0	c0009	1572	1	1	0	0	0	0	copy fasta	GPT2	chr16	46879362	46936289
GPT_chr8_144499140_144512172	1/0	c0001	1491	209	73	28	84	7	16	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/1	c0002	1491	158	16	41	73	8	19	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0003	1491	4	0	3	0	1	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0004	1491	2	1	0	0	0	1	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0005	1491	2	2	0	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0006	1491	1	0	0	0	0	1	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0007	1491	1	0	0	0	0	1	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0008	1491	1	0	0	0	0	1	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0009	1491	1	0	1	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0010	1491	1	0	0	0	0	1	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0011	1491	1	1	0	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0012	1491	1	1	0	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0013	1491	1	1	0	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0014	1491	1	0	1	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0015	1491	1	1	0	0	0	0	copy fasta	GPT	chr8	144499140	144512172
GPT_chr8_144499140_144512172	0/0	c0016	1491	1	0	0	1	0	0	copy fasta	GPT	chr8	144499140	144512172
GPX1_chr3_49352176_49363353	0/1	c0001	606	192	40	31	90	5	25	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	c0002	609	78	20	18	23	8	9	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	1/0	c0003	612	48	25	13	1	5	3	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	c0004	606	6	5	0	0	0	1	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	c0005	606	1	1	0	0	0	0	copy fasta	GPX1	chr3	49352176	49363353
GPX1_chr3_49352176_49363353	0/0	c0006	606	1	1	0	0	0	0	copy fasta	GPX1	chr3	49352176	49363353
GPX2_chr14_64934158_64947745	1/1	c0001	573	405	86	66	187	16	48	copy fasta	GPX2	chr14	64934158	64947745
GPX2_chr14_64934158_64947745	0/0	c0002	573	3	3	0	0	0	0	copy fasta	GPX2	chr14	64934158	64947745
GPX2_chr14_64934158_64947745	0/0	c0003	573	2	2	0	0	0	0	copy fasta	GPX2	chr14	64934158	64947745
GPX2_chr14_64934158_64947745	0/0	c0004	573	1	0	0	1	0	0	copy fasta	GPX2	chr14	64934158	64947745
GPX2_chr14_64934158_64947745	0/0	c0005	573	1	0	0	1	0	0	copy fasta	GPX2	chr14	64934158	64947745
GPX2_chr14_64934158_64947745	0/0	c0006	573	1	0	0	1	0	0	copy fasta	GPX2	chr14	64934158	64947745
GPX2_chr14_64934158_64947745	0/0	c0007	573	1	1	0	0	0	0	copy fasta	GPX2	chr14	64934158	64947745
GPX3_chr5_151015591_151033988	1/1	c0001	681	439	92	79	206	15	45	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	c0002	681	29	4	3	20	0	2	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	c0003	681	2	2	0	0	0	0	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	c0004	681	1	0	0	0	0	1	copy fasta	GPX3	chr5	151015591	151033988
GPX3_chr5_151015591_151033988	0/0	c0005	681	1	0	0	0	1	0	copy fasta	GPX3	chr5	151015591	151033988
GPX4_chr19_1098994_1111779	1/1	c0001	594	318	71	57	143	11	34	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	c0002	594	83	1	26	33	7	16	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	c0003	594	11	10	1	0	0	0	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	c0004	594	10	8	2	0	0	0	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	c0005	594	2	2	0	0	0	0	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	c0006	594	1	0	0	1	0	0	copy fasta	GPX4	chr19	1098994	1111779