JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GPX4_chr19_1098994_1111779	0/0	c0007	594	1	1	0	0	0	0	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	c0008	594	1	1	0	0	0	0	copy fasta	GPX4	chr19	1098994	1111779
GPX4_chr19_1098994_1111779	0/0	c0009	594	1	0	0	1	0	0	copy fasta	GPX4	chr19	1098994	1111779
GPX5_chr6_28520881_28539955	0/1	c0001	666	400	82	72	183	14	48	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	c0002	666	5	5	0	0	0	0	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	c0003	666	5	5	0	0	0	0	copy fasta	GPX5	chr6	28520881	28539955
GPX5_chr6_28520881_28539955	0/0	c0004	666	1	0	0	1	0	0	copy fasta	GPX5	chr6	28520881	28539955
GPX6_chr6_28498296_28520793	0/0	c0001	666	227	52	30	127	3	15	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	1/1	c0002	666	181	23	36	85	9	26	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	c0003	666	8	6	2	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	c0004	666	5	5	0	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	c0005	666	3	3	0	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	c0006	666	2	0	2	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	c0007	666	2	1	1	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	c0008	666	2	0	0	0	0	2	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	c0009	666	1	0	1	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	c0010	666	1	1	0	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	c0011	666	1	0	0	0	0	1	copy fasta	GPX6	chr6	28498296	28520793
GPX6_chr6_28498296_28520793	0/0	c0012	666	1	1	0	0	0	0	copy fasta	GPX6	chr6	28498296	28520793
GPX7_chr1_52597371_52614051	0/0	c0001	564	289	97	36	112	11	33	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	1/0	c0002	564	62	0	13	42	3	3	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	0/1	c0003	564	14	1	7	0	2	3	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	0/0	c0004	564	2	0	0	1	0	1	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	0/0	c0005	564	2	0	0	2	0	0	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	0/0	c0006	564	2	0	0	0	0	2	copy fasta	GPX7	chr1	52597371	52614051
GPX7_chr1_52597371_52614051	0/0	c0007	564	1	0	0	1	0	0	copy fasta	GPX7	chr1	52597371	52614051
GPX8_chr5_55155171_55172297	0/0	c0001	630	330	81	56	153	10	30	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	1/1	c0002	630	82	8	11	39	6	16	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	c0003	630	1	1	0	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GPX8_chr5_55155171_55172297	0/0	c0004	630	1	0	1	0	0	0	copy fasta	GPX8	chr5	55155171	55172297
GRAMD1A_chr19_34995323_35031469	1/0	c0001	2175	176	38	34	79	4	20	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0002	2175	80	10	20	31	7	12	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0003	2175	48	1	4	34	3	6	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0004	2175	14	12	0	0	0	2	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0005	2175	11	6	4	0	0	1	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0006	2175	4	2	1	1	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0007	2175	4	4	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0008	2175	3	3	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0009	2175	3	3	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0010	2175	3	0	0	3	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/1	c0011	2175	2	0	1	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0012	2175	2	0	2	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0013	2175	2	0	2	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0014	2175	1	0	0	1	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0015	2175	1	1	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0016	2175	1	0	0	1	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0017	2175	1	1	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0018	2175	1	0	0	1	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0019	2175	1	0	0	1	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469
GRAMD1A_chr19_34995323_35031469	0/0	c0020	2175	1	1	0	0	0	0	copy fasta	GRAMD1A	chr19	34995323	35031469