Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AK5_chr1_77277019_77564966	0/0	c0007	1692	1	0	0	1	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	c0008	1692	1	0	1	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	c0009	1692	1	0	1	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK6_chr5_69345984_69374520	0/1	c0001	519	418	95	71	198	14	39	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	c0002	519	1	0	1	0	0	0	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	c0003	519	1	0	0	0	0	1	copy fasta	AK6	chr5	69345984	69374520
AK6_chr5_69345984_69374520	0/0	c0004	519	1	1	0	0	0	0	copy fasta	AK6	chr5	69345984	69374520
AK7_chr14_96387128_96494427	0/1	c0001	2172	197	51	40	67	14	24	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0002	2172	62	16	11	27	0	8	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	1/0	c0003	2172	14	0	6	0	2	5	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0004	2172	12	10	2	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0005	2172	6	0	0	6	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0006	2172	4	4	0	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0007	2172	4	0	1	2	0	1	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0008	2172	2	0	0	0	0	2	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0009	2172	2	2	0	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0010	2172	2	0	0	2	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0011	2172	1	1	0	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0012	2172	1	1	0	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0013	2172	1	0	0	1	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0014	2172	1	0	0	0	0	1	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0015	2172	1	0	1	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0016	2172	1	1	0	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0017	2172	1	0	1	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0018	2172	1	0	0	0	0	1	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0019	2172	1	0	0	1	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0020	2172	1	0	0	1	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	c0021	2172	1	0	0	1	0	0	copy fasta	AK7	chr14	96387128	96494427
AK8_chr9_132720578_132883284	1/1	c0001	1440	223	50	45	92	8	26	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0002	1440	26	24	2	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0003	1440	4	4	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0004	1440	3	3	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0005	1440	2	2	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0006	1440	1	1	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0007	1440	1	1	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0008	1440	1	1	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0009	1440	1	1	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0010	1440	1	1	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0011	1440	1	0	0	1	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0012	1440	1	0	0	1	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	c0013	1440	1	0	1	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK9_chr6_109487855_109696202	0/0	c0001	5736	78	2	15	46	4	11	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	1/1	c0002	5736	69	35	14	11	3	4	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0003	5733	58	9	9	30	0	10	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0004	5733	57	5	11	32	5	4	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0005	5736	36	5	6	21	1	3	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0006	5733	16	3	5	4	2	2	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0007	5736	11	11	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0008	5736	11	0	5	6	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	c0009	5736	5	5	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202