JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRAMD2B_chr5_126418409_126499364	0/0	c0006	1299	1	0	0	1	0	0	copy fasta	GRAMD2B	chr5	126418409	126499364
GRAMD4_chr22_46615386_46684785	0/1	c0001	1737	297	69	63	116	14	34	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	c0002	1737	20	9	6	2	0	3	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	c0003	1737	2	2	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	1/0	c0004	1737	2	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	c0005	1737	1	0	0	0	0	1	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	c0006	1737	1	0	0	1	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	c0007	1737	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	c0008	1737	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	c0009	1737	1	0	1	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	c0010	1737	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAMD4_chr22_46615386_46684785	0/0	c0011	1737	1	1	0	0	0	0	copy fasta	GRAMD4	chr22	46615386	46684785
GRAP2_chr22_39896084_39978721	1/1	c0001	993	294	71	76	91	16	38	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	c0002	993	8	0	0	8	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	c0003	993	5	5	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	c0004	993	4	3	1	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	c0005	993	2	0	1	0	0	1	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	c0006	993	1	1	0	0	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	c0007	993	1	0	0	1	0	0	copy fasta	GRAP2	chr22	39896084	39978721
GRAP2_chr22_39896084_39978721	0/0	c0008	993	1	0	0	0	0	1	copy fasta	GRAP2	chr22	39896084	39978721
GRAPL_chr17_19122589_19164187	1/1	c0001	357	74	26	16	8	8	14	copy fasta	GRAPL	chr17	19122589	19164187
GRAP_chr17_19015656_19051957	1/1	c0001	654	254	56	50	102	14	30	copy fasta	GRAP	chr17	19015656	19051957
GRAP_chr17_19015656_19051957	0/0	c0002	654	4	0	2	2	0	0	copy fasta	GRAP	chr17	19015656	19051957
GRAP_chr17_19015656_19051957	0/0	c0003	654	1	0	0	1	0	0	copy fasta	GRAP	chr17	19015656	19051957
GRAP_chr17_19015656_19051957	0/0	c0004	654	1	0	0	1	0	0	copy fasta	GRAP	chr17	19015656	19051957
GRB10_chr7_50585068_50787896	0/0	c0001	1785	129	18	21	72	5	13	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0002	1785	107	46	18	26	5	12	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/1	c0003	1785	15	1	5	6	1	1	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	1/0	c0004	1785	7	5	1	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0005	1785	3	3	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0006	1785	3	0	3	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0007	1785	3	3	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0008	1785	2	2	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0009	1785	2	2	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0010	1785	1	0	1	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0011	1785	1	0	0	0	1	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0012	1785	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0013	1785	1	0	1	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0014	1785	1	1	0	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0015	1785	1	0	1	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB10_chr7_50585068_50787896	0/0	c0016	1785	1	0	1	0	0	0	copy fasta	GRB10	chr7	50585068	50787896
GRB14_chr2_164487417_164626482	1/1	c0001	1623	149	72	20	46	3	6	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	c0002	1623	132	8	38	57	7	22	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	c0003	1623	2	0	0	1	0	1	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	c0004	1623	2	0	1	0	0	1	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	c0005	1623	2	0	1	0	1	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	c0006	1623	1	0	0	0	0	1	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	c0007	1623	1	0	0	1	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	c0008	1623	1	1	0	0	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	c0009	1623	1	0	0	0	1	0	copy fasta	GRB14	chr2	164487417	164626482