JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRB14_chr2_164487417_164626482	0/0	c0010	1623	1	0	0	0	0	1	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	c0011	1623	1	1	0	0	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB14_chr2_164487417_164626482	0/0	c0012	1623	1	0	0	1	0	0	copy fasta	GRB14	chr2	164487417	164626482
GRB2_chr17_75313076_75410678	1/1	c0001	654	244	87	53	56	12	34	copy fasta	GRB2	chr17	75313076	75410678
GRB2_chr17_75313076_75410678	0/0	c0002	654	2	1	1	0	0	0	copy fasta	GRB2	chr17	75313076	75410678
GRB7_chr17_39732938_39752285	1/1	c0001	1599	324	51	71	155	13	32	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0002	1599	41	30	4	0	2	5	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0003	1599	5	5	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0004	1599	2	1	1	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0005	1599	1	0	0	1	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0006	1599	1	1	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0007	1599	1	1	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0008	1599	1	0	0	1	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0009	1599	1	0	0	0	0	1	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0010	1599	1	0	0	1	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0011	1599	1	0	0	1	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0012	1599	1	1	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0013	1599	1	0	0	1	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0014	1599	1	0	1	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0015	1599	1	1	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0016	1599	1	0	0	0	1	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0017	1599	1	1	0	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GRB7_chr17_39732938_39752285	0/0	c0018	1599	1	0	1	0	0	0	copy fasta	GRB7	chr17	39732938	39752285
GREB1L_chr18_21237232_21531112	0/1	c0001	5775	121	60	15	35	3	7	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0002	5775	8	8	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0003	5775	5	0	2	0	2	1	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0004	5763	3	1	2	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	1/0	c0005	5772	2	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0006	5775	1	0	1	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0007	5772	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0008	5775	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0009	5775	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0010	5775	1	1	0	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0011	5775	1	0	1	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0012	5775	1	0	0	1	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0013	5775	1	0	0	0	1	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1L_chr18_21237232_21531112	0/0	c0014	5775	1	0	1	0	0	0	copy fasta	GREB1L	chr18	21237232	21531112
GREB1_chr2_11529045_11647788	0/0	c0001	5850	48	1	10	32	0	5	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0002	5850	27	4	5	13	4	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0003	5850	23	0	7	13	2	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0004	5850	23	1	7	10	2	3	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0005	5850	17	0	0	14	0	3	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0006	5850	10	6	2	0	1	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0007	5850	6	4	0	2	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0008	5850	5	3	1	0	1	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	1/0	c0009	5850	5	4	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0010	5850	5	0	5	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0011	5850	5	0	2	2	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0012	5850	4	4	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0013	5850	4	0	0	2	0	2	copy fasta	GREB1	chr2	11529045	11647788