JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
GREB1_chr2_11529045_11647788	0/0	c0014	5850	4	0	0	4	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0015	5850	3	3	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0016	5850	3	3	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0017	5850	3	0	0	3	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0018	5850	3	3	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0019	5850	3	1	0	0	2	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0020	5850	3	0	0	3	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0021	5850	3	2	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0022	5850	3	1	1	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0023	5850	3	3	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0024	5850	3	0	3	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0025	5850	3	0	0	3	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0026	5850	3	0	0	1	2	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0027	5850	3	0	0	2	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0028	5850	2	2	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0029	5850	2	2	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0030	5850	2	1	0	1	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0031	5850	2	2	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0032	5850	2	2	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0033	5850	2	2	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0034	5850	2	2	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0035	5850	2	1	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0036	5850	2	2	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0037	5850	2	1	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0038	5850	2	0	2	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0039	5850	2	0	0	1	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0040	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0041	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0042	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0043	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0044	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0045	5850	1	0	0	1	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0046	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0047	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0048	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0049	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0050	5850	1	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0051	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0052	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0053	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0054	5850	1	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0055	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0056	5850	1	0	0	1	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0057	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0058	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0059	5850	1	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0060	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0061	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0062	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0063	5850	1	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788