JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GREB1_chr2_11529045_11647788	0/0	c0064	5850	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0065	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0066	5850	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0067	5850	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0068	5850	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0069	5850	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0070	5850	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0071	5850	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0072	5819	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0073	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0074	5850	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0075	5850	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0076	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0077	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0078	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0079	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0080	5850	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0081	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0082	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0083	5850	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/1	c0084	5850	1	0	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0085	5850	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0086	5850	1	1	0	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0087	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0088	5850	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0089	5850	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0090	5850	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0091	5850	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0092	5850	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0093	5850	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0094	5850	1	0	1	0	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0095	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0096	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0097	5850	1	0	0	1	0	0	copy fasta	GREB1	chr2	11529045	11647788
GREB1_chr2_11529045_11647788	0/0	c0098	5850	1	0	0	0	0	1	copy fasta	GREB1	chr2	11529045	11647788
GREM1_chr15_32713004_32750106	0/1	c0001	555	366	97	77	135	13	43	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	c0002	555	53	3	2	44	1	3	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	c0003	555	1	0	1	0	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM1_chr15_32713004_32750106	0/0	c0004	555	1	0	0	1	0	0	copy fasta	GREM1	chr15	32713004	32750106
GREM2_chr1_240484573_240617155	0/0	c0001	507	376	90	54	180	14	38	copy fasta	GREM2	chr1	240484573	240617155
GRHL1_chr2_9946693_10007277	1/1	c0001	1857	272	43	52	132	9	34	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	c0002	1857	86	5	20	52	5	4	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	c0003	1857	24	21	3	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	c0004	1857	23	19	4	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	c0005	1857	3	3	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	c0006	1857	3	3	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	c0007	1857	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	c0008	1857	1	0	0	1	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	c0009	1857	1	0	1	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	c0010	1857	1	0	0	1	0	0	copy fasta	GRHL1	chr2	9946693	10007277