JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRHL1_chr2_9946693_10007277	0/0	c0011	1857	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	c0012	1857	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL1_chr2_9946693_10007277	0/0	c0013	1857	1	1	0	0	0	0	copy fasta	GRHL1	chr2	9946693	10007277
GRHL2_chr8_101487439_101674726	1/1	c0001	1878	258	75	38	108	10	25	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	c0002	1878	15	5	1	9	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	c0003	1878	11	0	0	10	0	1	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	c0004	1878	9	0	0	9	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	c0005	1878	5	5	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	c0006	1878	2	1	1	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	c0007	1878	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	c0008	1878	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	c0009	1878	1	1	0	0	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	c0010	1878	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	c0011	1878	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL2_chr8_101487439_101674726	0/0	c0012	1878	1	0	0	1	0	0	copy fasta	GRHL2	chr8	101487439	101674726
GRHL3_chr1_24314357_24360318	1/0	c0001	1809	173	55	31	64	4	18	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/1	c0002	1809	92	7	15	52	3	14	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0003	1809	27	6	4	5	2	10	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0004	1809	27	19	4	3	0	1	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0005	1809	16	1	3	11	1	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0006	1809	14	0	1	10	1	2	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0007	1809	3	0	3	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0008	1809	3	3	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0009	1809	2	0	1	0	1	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0010	1809	2	1	1	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0011	1809	1	0	0	1	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0012	1809	1	1	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0013	1809	1	0	0	1	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0014	1809	1	0	1	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0015	1809	1	0	0	0	1	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0016	1809	1	0	0	0	1	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0017	1809	1	1	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0018	1809	1	1	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0019	1809	1	0	0	0	0	1	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0020	1809	1	0	0	1	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0021	1809	1	0	0	0	0	1	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0022	1809	1	1	0	0	0	0	copy fasta	GRHL3	chr1	24314357	24360318
GRHL3_chr1_24314357_24360318	0/0	c0023	1809	1	0	0	0	0	1	copy fasta	GRHL3	chr1	24314357	24360318
GRHPR_chr9_37417696_37441990	0/1	c0001	987	313	53	61	150	14	34	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	1/0	c0002	987	68	27	11	23	0	6	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	c0003	987	6	6	0	0	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	c0004	987	5	3	0	1	0	1	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	c0005	987	2	2	0	0	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	c0006	987	1	1	0	0	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	c0007	987	1	0	0	0	0	1	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	c0008	987	1	0	0	1	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	c0009	987	1	0	0	1	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	c0010	987	1	1	0	0	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	c0011	987	1	1	0	0	0	0	copy fasta	GRHPR	chr9	37417696	37441990
GRHPR_chr9_37417696_37441990	0/0	c0012	987	1	0	0	0	0	1	copy fasta	GRHPR	chr9	37417696	37441990