JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRHPR_chr9_37417696_37441990	0/0	c0013	987	1	0	0	0	0	1	copy fasta	GRHPR	chr9	37417696	37441990
GRIA1_chr5_153485670_153818869	1/0	c0001	2721	150	53	33	25	7	31	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/1	c0002	2721	24	8	9	0	3	3	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	c0003	2721	6	4	2	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	c0004	2721	4	3	1	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	c0005	2721	3	3	0	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	c0006	2721	2	2	0	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	c0007	2721	2	1	1	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	c0008	2721	1	1	0	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	c0009	2721	1	1	0	0	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA1_chr5_153485670_153818869	0/0	c0010	2721	1	0	0	1	0	0	copy fasta	GRIA1	chr5	153485670	153818869
GRIA2_chr4_157215728_157371075	0/0	c0001	2652	112	36	19	40	8	9	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	c0002	2652	91	23	14	42	1	11	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	c0003	2652	10	9	1	0	0	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	c0004	2652	2	0	2	0	0	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA2_chr4_157215728_157371075	0/0	c0005	2652	1	0	0	0	1	0	copy fasta	GRIA2	chr4	157215728	157371075
GRIA3_chrX_123179278_123495915	1/0	c0001	2685	101	38	18	26	2	16	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/1	c0002	2685	100	23	19	46	3	8	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	c0003	2685	2	2	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	c0004	2683	1	0	0	1	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	c0005	2685	1	1	0	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	c0006	2685	1	0	1	0	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA3_chrX_123179278_123495915	0/0	c0007	2685	1	0	0	1	0	0	copy fasta	GRIA3	chrX	123179278	123495915
GRIA4_chr11_105605073_105987090	1/1	c0001	2709	156	54	25	60	5	10	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	c0002	2709	21	17	0	1	1	2	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	c0003	2709	2	2	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	c0004	2709	1	0	0	0	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	c0005	2709	1	0	0	0	0	1	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	c0006	2709	1	0	1	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	c0007	2709	1	0	0	1	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRIA4_chr11_105605073_105987090	0/0	c0008	2709	1	1	0	0	0	0	copy fasta	GRIA4	chr11	105605073	105987090
GRID1_chr10_85594552_86371795	0/0	c0001	3030	35	10	8	4	3	10	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	c0002	3030	26	15	4	5	0	2	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	c0003	3030	13	5	5	0	0	3	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	c0004	3030	9	6	2	0	0	1	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	c0005	3030	3	3	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	c0006	3030	2	0	0	2	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	c0007	3030	2	2	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	c0008	3030	2	0	1	0	1	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	c0009	3030	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	c0010	3030	1	0	0	1	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	c0011	3030	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID1_chr10_85594552_86371795	0/0	c0012	3030	1	1	0	0	0	0	copy fasta	GRID1	chr10	85594552	86371795
GRID2IP_chr7_6491778_6556461	0/1	c0001	3636	61	16	13	22	4	5	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0002	3636	51	8	22	9	7	5	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	1/0	c0003	3636	36	0	2	27	0	6	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0004	3636	23	9	5	5	0	4	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0005	3636	20	0	2	17	0	1	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0006	3636	16	0	0	16	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0007	3636	10	1	4	1	1	3	copy fasta	GRID2IP	chr7	6491778	6556461