JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRID2IP_chr7_6491778_6556461	0/0	c0058	3636	1	0	0	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0059	3636	1	0	0	0	0	1	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0060	3636	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0061	3636	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0062	3636	1	1	0	0	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0063	3636	1	0	0	0	0	1	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0064	3636	1	0	0	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0065	3636	1	0	0	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0066	3636	1	0	0	1	0	0	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2IP_chr7_6491778_6556461	0/0	c0067	3636	1	0	0	0	0	1	copy fasta	GRID2IP	chr7	6491778	6556461
GRID2_chr4_92298966_93779566	0/0	c0001	3024	23	16	4	2	0	1	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	c0002	3024	5	0	2	2	0	1	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	c0003	3024	2	2	0	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	c0004	3024	1	1	0	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	c0005	3024	1	1	0	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	c0006	3024	1	1	0	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRID2_chr4_92298966_93779566	0/0	c0007	3024	1	1	0	0	0	0	copy fasta	GRID2	chr4	92298966	93779566
GRIFIN_chr7_2469728_2481398	1/1	c0001	435	336	78	64	140	16	36	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	c0002	435	22	10	5	5	0	2	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	c0003	435	8	1	1	0	0	6	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	c0004	435	5	0	0	5	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	c0005	435	2	0	0	2	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	c0006	435	2	2	0	0	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	c0007	435	1	0	1	0	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	c0008	435	1	0	1	0	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	c0009	435	1	1	0	0	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	c0010	435	1	1	0	0	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIFIN_chr7_2469728_2481398	0/0	c0011	435	1	1	0	0	0	0	copy fasta	GRIFIN	chr7	2469728	2481398
GRIK1_chr21_29531933_29944996	0/0	c0001	2850	64	39	6	15	1	3	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	c0002	2850	52	16	10	20	3	3	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	c0003	2850	21	12	6	3	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	c0004	2850	15	4	3	8	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	c0005	2850	2	1	1	0	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	c0006	2850	2	2	0	0	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	c0007	2850	1	0	1	0	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	c0008	2850	1	0	1	0	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	c0009	2850	1	1	0	0	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	c0010	2850	1	0	0	1	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	c0011	2850	1	0	0	1	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK1_chr21_29531933_29944996	0/0	c0012	2850	1	1	0	0	0	0	copy fasta	GRIK1	chr21	29531933	29944996
GRIK2_chr6_101388708_102075083	0/0	c0001	2727	62	29	5	21	0	7	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	c0002	2727	31	6	6	12	0	7	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	c0003	2727	8	5	0	2	0	1	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	c0004	2727	4	0	1	3	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	c0005	2727	3	3	0	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	c0006	2727	2	2	0	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	c0007	2727	1	1	0	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	c0008	2727	1	1	0	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	c0009	2727	1	0	1	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	c0010	2727	1	1	0	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083