JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRIK2_chr6_101388708_102075083	0/0	c0011	2727	1	0	0	0	0	1	copy fasta	GRIK2	chr6	101388708	102075083
GRIK2_chr6_101388708_102075083	0/0	c0012	2727	1	0	1	0	0	0	copy fasta	GRIK2	chr6	101388708	102075083
GRIK3_chr1_36790527_37039515	1/0	c0001	2760	46	24	9	2	4	6	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/1	c0002	2760	44	35	5	0	0	3	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	c0003	2760	13	10	3	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	c0004	2760	6	2	0	3	0	1	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	c0005	2760	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	c0006	2760	1	0	1	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	c0007	2760	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	c0008	2760	1	0	0	1	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK3_chr1_36790527_37039515	0/0	c0009	2760	1	1	0	0	0	0	copy fasta	GRIK3	chr1	36790527	37039515
GRIK4_chr11_120506748_120993906	0/0	c0001	2871	37	16	5	8	2	6	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/1	c0002	2871	24	18	4	0	0	1	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0003	2871	11	3	0	8	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0004	2871	9	1	2	2	2	2	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0005	2871	9	0	0	8	0	1	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0006	2871	8	7	1	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0007	2871	7	0	1	1	0	5	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0008	2871	5	5	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	1/0	c0009	2871	3	1	1	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0010	2871	2	2	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0011	2871	2	2	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0012	2871	2	2	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0013	2871	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0014	2871	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0015	2871	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0016	2871	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0017	2871	1	0	0	0	0	1	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0018	2871	1	0	0	1	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0019	2871	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0020	2871	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK4_chr11_120506748_120993906	0/0	c0021	2871	1	1	0	0	0	0	copy fasta	GRIK4	chr11	120506748	120993906
GRIK5_chr19_41993324_42075206	1/1	c0001	2943	166	44	25	58	4	33	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	c0002	2943	1	0	0	1	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	c0003	2943	1	0	1	0	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	c0004	2943	1	0	0	0	0	1	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	c0005	2943	1	0	0	1	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	c0006	2943	1	1	0	0	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIK5_chr19_41993324_42075206	0/0	c0007	2943	1	1	0	0	0	0	copy fasta	GRIK5	chr19	41993324	42075206
GRIN1_chr9_137134154_137173756	1/0	c0001	2817	236	84	45	66	11	29	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/1	c0002	2817	32	1	16	0	5	9	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/0	c0003	2817	15	2	0	10	0	3	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/0	c0004	2817	5	0	0	5	0	0	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/0	c0005	2817	4	4	0	0	0	0	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/0	c0006	2817	2	2	0	0	0	0	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/0	c0007	2817	1	1	0	0	0	0	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/0	c0008	2817	1	0	1	0	0	0	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/0	c0009	2817	1	0	0	0	0	1	copy fasta	GRIN1	chr9	137134154	137173756
GRIN1_chr9_137134154_137173756	0/0	c0010	2817	1	0	0	1	0	0	copy fasta	GRIN1	chr9	137134154	137173756
GRIN2A_chr16_9748408_10187428	1/1	c0001	4395	90	28	24	26	3	7	copy fasta	GRIN2A	chr16	9748408	10187428