JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRIN2A_chr16_9748408_10187428	0/0	c0002	4395	47	22	13	4	3	5	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	c0003	4395	25	22	2	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	c0004	4395	1	1	0	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	c0005	4395	1	0	1	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	c0006	4395	1	1	0	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	c0007	4395	1	1	0	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	c0008	4395	1	0	0	1	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2A_chr16_9748408_10187428	0/0	c0009	4395	1	1	0	0	0	0	copy fasta	GRIN2A	chr16	9748408	10187428
GRIN2B_chr12_13532337_13986602	0/1	c0001	4455	23	5	8	7	1	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	1/0	c0002	4455	21	12	4	2	2	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0003	4455	16	10	2	3	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0004	4455	14	0	2	4	1	7	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0005	4455	12	0	6	0	4	2	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0006	4455	11	9	0	0	1	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0007	4455	8	5	0	0	1	2	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0008	4455	8	1	1	5	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0009	4455	7	6	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0010	4455	6	1	3	0	1	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0011	4455	6	6	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0012	4455	5	0	3	0	1	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0013	4455	5	1	3	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0014	4455	4	0	0	3	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0015	4455	4	4	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0016	4455	4	4	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0017	4455	4	0	1	2	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0018	4455	4	1	1	1	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0019	4455	3	0	0	3	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0020	4455	3	0	2	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0021	4455	2	0	0	2	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0022	4455	2	0	0	1	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0023	4455	2	2	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0024	4455	2	2	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0025	4455	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0026	4455	1	0	0	1	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0027	4455	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0028	4455	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0029	4455	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0030	4455	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0031	4455	1	0	1	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0032	4455	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0033	4455	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0034	4455	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0035	4455	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0036	4455	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0037	4455	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0038	4455	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0039	4455	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0040	4455	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0041	4455	1	1	0	0	0	0	copy fasta	GRIN2B	chr12	13532337	13986602
GRIN2B_chr12_13532337_13986602	0/0	c0042	4455	1	0	0	0	0	1	copy fasta	GRIN2B	chr12	13532337	13986602