JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRIN2C_chr17_74837023_74864885	0/1	c0001	3711	125	24	33	43	7	17	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0002	3711	83	23	9	33	8	10	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0003	3702	74	12	10	41	1	10	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0004	3711	11	0	0	11	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0005	3712	7	0	2	4	0	1	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0006	3711	5	5	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0007	3712	4	1	1	0	0	2	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	1/0	c0008	3702	4	2	1	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0009	3711	4	4	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0010	3703	4	0	1	2	0	1	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0011	3711	4	3	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0012	3705	3	3	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0013	3711	3	3	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0014	3711	2	0	1	0	0	1	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0015	3711	2	2	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0016	3712	2	0	0	2	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0017	3711	2	1	1	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0018	3702	2	2	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0019	3711	1	1	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0020	3711	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0021	3711	1	0	1	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0022	3711	1	1	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0023	3712	1	0	1	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0024	3711	1	1	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0025	3711	1	1	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0026	3700	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0027	3711	1	0	0	0	0	1	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0028	3711	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0029	3712	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0030	3711	1	0	0	0	0	1	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0031	3712	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0032	3711	1	0	1	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0033	3712	1	0	1	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0034	3712	1	1	0	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0035	3703	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0036	3702	1	0	0	1	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2C_chr17_74837023_74864885	0/0	c0037	3702	1	0	1	0	0	0	copy fasta	GRIN2C	chr17	74837023	74864885
GRIN2D_chr19_48388668_48449931	0/1	c0001	4011	227	51	50	89	7	29	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	1/0	c0002	4011	61	30	4	17	1	8	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0003	4011	36	0	3	31	1	1	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0004	4011	12	4	4	4	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0005	4011	5	0	4	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0006	4011	3	1	2	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0007	4011	2	1	1	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0008	4011	2	0	2	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0009	4011	2	2	0	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0010	4011	2	2	0	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0011	4011	2	0	2	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0012	4011	1	0	1	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0013	4011	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931