JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRIN2D_chr19_48388668_48449931	0/0	c0014	4011	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0015	4011	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0016	3993	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0017	4011	1	0	0	0	0	1	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0018	4011	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0019	4011	1	1	0	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0020	4011	1	0	0	0	0	1	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0021	4011	1	0	1	0	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0022	4011	1	0	0	1	0	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN2D_chr19_48388668_48449931	0/0	c0023	4011	1	0	0	0	1	0	copy fasta	GRIN2D	chr19	48388668	48449931
GRIN3A_chr9_101564352_101743647	0/0	c0001	3348	61	18	14	15	3	11	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0002	3348	41	24	4	7	2	4	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0003	3348	32	3	2	27	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0004	3348	21	0	6	9	2	4	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0005	3348	15	15	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/1	c0006	3348	15	0	1	9	0	4	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0007	3348	14	1	3	7	1	2	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0008	3348	14	2	3	9	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0009	3348	11	1	5	0	4	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0010	3348	9	0	8	0	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0011	3348	9	0	3	6	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0012	3348	8	0	0	8	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0013	3348	6	2	1	2	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0014	3348	5	1	0	3	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0015	3348	5	1	0	3	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0016	3348	4	4	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0017	3348	4	2	1	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0018	3348	4	1	1	0	0	2	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0019	3348	3	2	1	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	1/0	c0020	3348	3	0	0	2	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0021	3348	3	0	0	3	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0022	3348	2	1	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0023	3348	2	0	0	1	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0024	3348	2	0	2	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0025	3348	2	0	0	2	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0026	3348	2	2	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0027	3348	2	0	0	2	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0028	3348	2	0	0	2	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0029	3348	2	0	1	0	1	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0030	3348	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0031	3348	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0032	3348	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0033	3348	1	0	0	0	1	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0034	3348	1	0	1	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0035	3348	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0036	3348	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0037	3348	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0038	3348	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0039	3348	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0040	3348	1	0	0	0	0	1	copy fasta	GRIN3A	chr9	101564352	101743647