JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRIN3A_chr9_101564352_101743647	0/0	c0041	3348	1	0	0	0	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0042	3348	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0043	3348	1	0	0	0	0	1	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0044	3348	1	0	1	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0045	3348	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0046	3348	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0047	3348	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0048	3348	1	1	0	0	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0049	3348	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3A_chr9_101564352_101743647	0/0	c0050	3348	1	0	0	1	0	0	copy fasta	GRIN3A	chr9	101564352	101743647
GRIN3B_chr19_995419_1014732	0/0	c0001	3132	48	0	13	31	1	3	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0002	3132	37	0	4	29	2	2	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0003	3129	33	0	0	28	0	5	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0004	3132	23	0	1	21	0	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0005	3109	18	1	4	8	0	5	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0006	3132	12	5	4	0	0	3	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/1	c0007	3132	11	0	5	1	0	4	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0008	3132	10	0	9	0	1	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0009	3132	10	0	0	8	0	2	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0010	3132	7	0	7	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0011	3105	7	7	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0012	3129	7	5	2	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0013	3132	6	0	1	3	0	2	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0014	3132	6	4	2	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0015	3132	6	5	1	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0016	3132	5	1	1	1	2	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0017	3132	5	0	0	0	3	2	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0018	3105	5	0	0	4	0	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	1/0	c0019	3132	5	0	2	0	1	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0020	3132	5	5	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0021	3129	4	0	0	4	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0022	3132	4	0	0	4	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0023	3109	4	0	2	0	0	2	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0024	3132	4	4	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0025	3109	3	0	3	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0026	3136	3	0	0	0	1	2	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0027	3136	3	0	3	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0028	3109	3	3	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0029	3132	3	2	0	1	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0030	3132	3	0	0	3	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0031	3132	3	0	0	3	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0032	3132	3	3	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0033	3109	3	3	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0034	3132	2	1	1	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0035	3132	2	2	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0036	3132	2	2	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0037	3132	2	0	0	1	0	1	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0038	3109	2	2	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0039	3109	2	0	0	0	2	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0040	3132	2	0	0	2	0	0	copy fasta	GRIN3B	chr19	995419	1014732