JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRIN3B_chr19_995419_1014732	0/0	c0141	3132	1	1	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0142	3109	1	1	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0143	3129	1	1	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0144	3132	1	1	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0145	3132	1	1	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0146	3132	1	0	0	1	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0147	3132	1	1	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRIN3B_chr19_995419_1014732	0/0	c0148	3132	1	1	0	0	0	0	copy fasta	GRIN3B	chr19	995419	1014732
GRINA_chr8_143985056_143998415	0/1	c0001	1116	332	94	66	120	10	41	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	1/0	c0002	1116	14	0	1	12	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	c0003	1116	2	0	0	2	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	c0004	1116	1	0	1	0	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	c0005	1116	1	0	0	1	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	c0006	1116	1	0	0	1	0	0	copy fasta	GRINA	chr8	143985056	143998415
GRINA_chr8_143985056_143998415	0/0	c0007	1116	1	0	0	0	0	1	copy fasta	GRINA	chr8	143985056	143998415
GRIP1_chr12_66342431_66684076	0/1	c0001	3387	173	46	31	59	10	26	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	1/0	c0002	3387	43	28	6	8	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	c0003	3387	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	c0004	3387	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	c0005	3387	1	0	1	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	c0006	3387	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	c0007	3387	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	c0008	3387	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	c0009	3387	1	1	0	0	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP1_chr12_66342431_66684076	0/0	c0010	3387	1	0	0	1	0	0	copy fasta	GRIP1	chr12	66342431	66684076
GRIP2_chr3_14484107_14545342	0/0	c0001	3132	147	21	32	77	4	13	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	1/0	c0002	3132	94	18	30	31	6	8	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0003	3132	26	8	4	12	0	2	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0004	3132	23	2	1	18	0	2	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0005	3132	15	10	1	0	0	4	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0006	3132	10	10	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0007	3132	8	7	1	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0008	3132	7	2	0	5	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0009	3132	6	0	0	6	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0010	3132	5	5	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0011	3132	4	1	1	0	2	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0012	3132	4	0	0	4	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0013	3132	3	0	2	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0014	3132	3	0	1	0	2	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0015	3132	3	2	1	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0016	3132	3	3	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0017	3132	2	0	0	0	0	2	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0018	3132	2	0	0	2	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0019	3132	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0020	3132	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0021	3132	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0022	3132	1	0	0	0	1	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0023	3132	1	1	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0024	3132	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0025	3132	1	0	0	0	0	1	copy fasta	GRIP2	chr3	14484107	14545342