JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRIP2_chr3_14484107_14545342	0/0	c0026	3132	1	1	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0027	3132	1	0	0	0	0	1	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0028	3132	1	0	1	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0029	3132	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0030	3132	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0031	3132	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0032	3132	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/1	c0033	3132	1	0	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0034	3132	1	0	1	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0035	3132	1	1	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0036	3132	1	0	0	0	0	1	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0037	3132	1	0	0	0	1	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0038	3132	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0039	3132	1	1	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0040	3132	1	0	0	1	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIP2_chr3_14484107_14545342	0/0	c0041	3132	1	1	0	0	0	0	copy fasta	GRIP2	chr3	14484107	14545342
GRIPAP1_chrX_48968723_49007264	0/0	c0001	2526	175	45	27	81	4	18	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/1	c0002	2526	75	1	21	34	8	10	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0003	2526	19	15	4	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0004	2526	13	11	2	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	1/0	c0005	2526	5	4	0	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0006	2527	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0007	2525	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0008	2526	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0009	2526	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0010	2525	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0011	2526	1	0	1	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0012	2526	1	0	0	0	1	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0013	2525	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0014	2526	1	0	1	0	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRIPAP1_chrX_48968723_49007264	0/0	c0015	2525	1	0	0	1	0	0	copy fasta	GRIPAP1	chrX	48968723	49007264
GRK2_chr11_67261473_67291556	1/0	c0001	2070	154	66	24	59	1	3	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/1	c0002	2070	137	15	34	66	5	16	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	c0003	2070	5	4	1	0	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	c0004	2070	3	3	0	0	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	c0005	2070	1	0	0	0	0	1	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	c0006	2070	1	0	0	1	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK2_chr11_67261473_67291556	0/0	c0007	2070	1	0	1	0	0	0	copy fasta	GRK2	chr11	67261473	67291556
GRK3_chr22_25559675_25734294	1/1	c0001	2067	165	69	36	40	6	12	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	c0002	2067	3	3	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	c0003	2067	2	2	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	c0004	2067	2	2	0	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	c0005	2067	1	0	0	1	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	c0006	2067	1	0	1	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	c0007	2067	1	0	0	1	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK3_chr22_25559675_25734294	0/0	c0008	2067	1	0	1	0	0	0	copy fasta	GRK3	chr22	25559675	25734294
GRK4_chr4_2958571_3045760	0/1	c0001	1737	95	21	26	36	3	8	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0002	1737	35	12	6	12	1	4	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0003	1737	33	5	8	12	4	4	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	1/0	c0004	1737	30	0	2	21	3	3	copy fasta	GRK4	chr4	2958571	3045760