JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRK4_chr4_2958571_3045760	0/0	c0005	1737	25	21	2	0	1	1	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0006	1737	10	7	1	0	0	2	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0007	1737	6	0	3	0	2	1	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0008	1737	4	3	0	0	0	1	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0009	1737	4	4	0	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0010	1737	3	0	0	3	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0011	1737	3	2	1	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0012	1737	3	0	3	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0013	1737	2	0	2	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0014	1737	2	2	0	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0015	1737	2	1	1	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0016	1737	2	0	1	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0017	1737	2	0	1	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0018	1737	1	0	1	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0019	1737	1	1	0	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0020	1737	1	0	0	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0021	1737	1	0	0	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0022	1737	1	0	0	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0023	1737	1	0	0	1	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK4_chr4_2958571_3045760	0/0	c0024	1737	1	1	0	0	0	0	copy fasta	GRK4	chr4	2958571	3045760
GRK5_chr10_119202571_119464745	1/0	c0001	1773	128	41	27	26	10	23	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/1	c0002	1773	23	0	4	13	2	3	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	c0003	1773	20	16	1	1	0	2	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	c0004	1773	13	10	2	1	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	c0005	1773	9	9	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	c0006	1773	3	3	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	c0007	1773	2	2	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	c0008	1773	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	c0009	1773	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	c0010	1773	1	0	0	1	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK5_chr10_119202571_119464745	0/0	c0011	1773	1	1	0	0	0	0	copy fasta	GRK5	chr10	119202571	119464745
GRK6_chr5_177421676_177447891	1/0	c0001	1731	235	41	52	111	7	23	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/1	c0002	1731	106	27	28	33	5	12	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0003	1731	15	15	0	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0004	1731	9	4	0	0	0	5	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0005	1731	5	0	0	5	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0006	1731	2	2	0	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0007	1731	2	2	0	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0008	1731	1	0	0	0	0	1	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0009	1731	1	0	0	1	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0010	1731	1	0	0	1	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0011	1731	1	0	0	0	0	1	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0012	1731	1	1	0	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0013	1731	1	0	1	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0014	1731	1	0	0	1	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK6_chr5_177421676_177447891	0/0	c0015	1731	1	0	1	0	0	0	copy fasta	GRK6	chr5	177421676	177447891
GRK7_chr3_141758408_141824352	1/1	c0001	1662	279	75	50	116	9	27	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	c0002	1662	24	6	8	1	5	4	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	c0003	1662	22	0	3	17	0	2	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	c0004	1662	21	4	3	11	0	3	copy fasta	GRK7	chr3	141758408	141824352