JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRK7_chr3_141758408_141824352	0/0	c0005	1662	5	5	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	c0006	1662	2	2	0	0	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	c0007	1662	1	0	0	1	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	c0008	1662	1	0	0	1	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	c0009	1662	1	0	0	0	0	1	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	c0010	1662	1	0	0	1	0	0	copy fasta	GRK7	chr3	141758408	141824352
GRK7_chr3_141758408_141824352	0/0	c0011	1662	1	0	0	0	0	1	copy fasta	GRK7	chr3	141758408	141824352
GRM1_chr6_146024062_146442601	0/1	c0001	3585	46	22	5	13	2	3	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	1/0	c0002	3585	33	5	10	11	1	5	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0003	3585	20	4	6	3	4	3	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0004	3585	17	17	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0005	3585	12	11	0	0	0	1	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0006	3585	6	6	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0007	3585	5	4	1	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0008	3585	4	4	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0009	3585	3	2	1	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0010	3585	2	0	0	2	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0011	3585	2	0	1	0	1	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0012	3585	2	0	0	2	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0013	3585	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0014	3585	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0015	3585	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0016	3585	1	1	0	0	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0017	3585	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM1_chr6_146024062_146442601	0/0	c0018	3585	1	0	0	1	0	0	copy fasta	GRM1	chr6	146024062	146442601
GRM2_chr3_51702068_51723613	1/1	c0001	2619	296	63	68	120	13	30	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0002	2619	12	10	2	0	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0003	2619	5	5	0	0	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0004	2619	4	0	4	0	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0005	2619	3	0	0	3	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0006	2619	3	0	2	0	1	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0007	2619	2	0	0	0	0	2	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0008	2619	2	2	0	0	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0009	2619	1	0	0	0	0	1	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0010	2619	1	0	0	1	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0011	2619	1	0	0	0	0	1	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0012	2619	1	1	0	0	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM2_chr3_51702068_51723613	0/0	c0013	2619	1	1	0	0	0	0	copy fasta	GRM2	chr3	51702068	51723613
GRM3_chr7_86638909_86869879	1/1	c0001	2640	186	75	26	68	5	10	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	c0002	2640	11	2	3	3	1	2	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	c0003	2640	8	6	2	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	c0004	2640	2	1	1	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	c0005	2640	2	2	0	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	c0006	2640	2	0	0	2	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	c0007	2640	2	0	2	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	c0008	2640	1	0	0	1	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	c0009	2640	1	1	0	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM3_chr7_86638909_86869879	0/0	c0010	2640	1	1	0	0	0	0	copy fasta	GRM3	chr7	86638909	86869879
GRM4_chr6_34013643_34151087	1/0	c0001	2739	116	14	27	49	8	17	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/1	c0002	2739	80	40	19	18	0	2	copy fasta	GRM4	chr6	34013643	34151087