JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRM4_chr6_34013643_34151087	0/0	c0003	2739	64	15	13	26	0	10	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0004	2739	4	4	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0005	2739	4	4	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0006	2739	3	3	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0007	2739	2	0	0	2	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0008	2739	2	0	0	1	0	1	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0009	2739	1	0	0	1	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0010	2739	1	0	0	1	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0011	2739	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0012	2739	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0013	2739	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0014	2739	1	0	1	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM4_chr6_34013643_34151087	0/0	c0015	2739	1	1	0	0	0	0	copy fasta	GRM4	chr6	34013643	34151087
GRM5_chr11_88499642_89070982	0/1	c0001	3639	144	52	27	56	2	6	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0002	3639	14	10	0	4	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	1/0	c0003	3639	6	3	2	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0004	3639	4	4	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0005	3639	3	3	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0006	3639	2	2	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0007	3639	2	2	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0008	3639	2	2	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0009	3639	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0010	3639	1	0	1	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0011	3639	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0012	3639	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0013	3639	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0014	3639	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM5_chr11_88499642_89070982	0/0	c0015	3639	1	1	0	0	0	0	copy fasta	GRM5	chr11	88499642	89070982
GRM6_chr5_178973327_179000320	0/1	c0001	2634	108	15	26	50	6	10	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0002	2634	70	5	12	38	3	12	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0003	2634	58	25	13	11	3	6	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0004	2634	51	14	1	32	0	4	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0005	2634	26	0	3	23	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0006	2634	16	0	3	10	0	3	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0007	2634	8	0	0	8	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0008	2634	8	0	7	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0009	2634	8	0	1	7	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0010	2634	8	0	4	4	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0011	2634	7	5	1	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0012	2634	4	0	0	4	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0013	2634	4	0	0	4	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0014	2634	4	4	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0015	2634	4	0	2	0	2	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0016	2634	4	0	4	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0017	2634	3	0	2	0	1	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	1/0	c0018	2634	3	2	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0019	2634	3	3	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0020	2634	3	2	1	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0021	2634	3	3	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0022	2634	3	0	0	2	0	1	copy fasta	GRM6	chr5	178973327	179000320