JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRM6_chr5_178973327_179000320	0/0	c0023	2634	3	0	2	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0024	2634	3	0	0	3	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0025	2634	2	0	0	2	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0026	2634	2	0	1	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0027	2634	2	2	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0028	2634	2	1	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0029	2634	2	1	1	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0030	2634	2	2	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0031	2634	2	0	0	2	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0032	2634	2	2	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0033	2634	2	0	0	1	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0034	2619	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0035	2634	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0036	2634	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0037	2634	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0038	2634	1	0	0	0	1	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0039	2634	1	0	1	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0040	2634	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0041	2634	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0042	2634	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0043	2634	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0044	2634	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0045	2634	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0046	2634	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0047	2634	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0048	2634	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0049	2634	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0050	2634	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0051	2634	1	0	1	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0052	2634	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0053	2634	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0054	2634	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0055	2634	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0056	2634	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0057	2634	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0058	2634	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0059	2634	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0060	2634	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0061	2634	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0062	2634	1	0	0	0	1	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0063	2634	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0064	2634	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0065	2634	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0066	2634	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0067	2634	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0068	2634	1	0	0	0	1	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0069	2634	1	0	0	0	0	1	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0070	2634	1	1	0	0	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM6_chr5_178973327_179000320	0/0	c0071	2619	1	0	0	1	0	0	copy fasta	GRM6	chr5	178973327	179000320
GRM7_chr3_6856115_7746533	0/0	c0001	2748	20	13	3	0	1	3	copy fasta	GRM7	chr3	6856115	7746533