JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRM7_chr3_6856115_7746533	0/0	c0002	2748	14	12	0	0	0	2	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0003	2748	14	7	3	1	0	3	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0004	2748	8	7	1	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0005	2748	5	1	4	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0006	2748	3	0	3	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0007	2748	2	0	2	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0008	2748	2	2	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0009	2748	2	2	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0010	2748	1	1	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0011	2748	1	1	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0012	2748	1	1	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0013	2748	1	1	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0014	2748	1	1	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0015	2748	1	1	0	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0016	2748	1	0	1	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0017	2748	1	0	0	1	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0018	2748	1	0	0	0	1	0	copy fasta	GRM7	chr3	6856115	7746533
GRM7_chr3_6856115_7746533	0/0	c0019	2748	1	0	1	0	0	0	copy fasta	GRM7	chr3	6856115	7746533
GRM8_chr7_126433598_127257941	0/0	c0001	2727	87	43	18	6	3	17	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	c0002	2727	9	1	2	4	1	1	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	c0003	2727	4	4	0	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	c0004	2727	3	3	0	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	c0005	2727	1	1	0	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	c0006	2727	1	0	1	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	c0007	2727	1	0	1	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	c0008	2727	1	1	0	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRM8_chr7_126433598_127257941	0/0	c0009	2727	1	1	0	0	0	0	copy fasta	GRM8	chr7	126433598	127257941
GRN_chr17_44340302_44358106	1/1	c0001	1782	363	85	73	145	15	43	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0002	1782	67	0	3	60	0	4	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0003	1782	4	4	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0004	1782	3	0	0	1	1	1	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0005	1782	2	2	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0006	1782	2	2	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0007	1782	2	0	2	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0008	1782	1	0	0	1	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0009	1782	1	0	1	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0010	1782	1	1	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0011	1782	1	0	0	1	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0012	1782	1	1	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0013	1782	1	0	1	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0014	1782	1	0	1	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0015	1782	1	1	0	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRN_chr17_44340302_44358106	0/0	c0016	1782	1	0	1	0	0	0	copy fasta	GRN	chr17	44340302	44358106
GRPEL1_chr4_7053895_7073064	1/1	c0001	654	411	94	79	178	16	42	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	c0002	654	3	0	0	3	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	c0003	654	1	0	0	1	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	c0004	654	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	c0005	654	1	1	0	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL1_chr4_7053895_7073064	0/0	c0006	654	1	0	1	0	0	0	copy fasta	GRPEL1	chr4	7053895	7073064
GRPEL2_chr5_149340499_149359583	1/1	c0001	678	382	90	66	167	16	41	copy fasta	GRPEL2	chr5	149340499	149359583