JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRPEL2_chr5_149340499_149359583	0/0	c0002	678	3	0	0	3	0	0	copy fasta	GRPEL2	chr5	149340499	149359583
GRPEL2_chr5_149340499_149359583	0/0	c0003	678	1	0	0	0	0	1	copy fasta	GRPEL2	chr5	149340499	149359583
GRPR_chrX_16118565_16158518	1/1	c0001	1155	161	18	37	85	3	16	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	c0002	1155	86	25	17	33	4	7	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	c0003	1155	28	26	2	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	c0004	1155	2	2	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	c0005	1155	1	0	0	0	0	1	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	c0006	1155	1	1	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	c0007	1155	1	1	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	c0008	1155	1	1	0	0	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	c0009	1155	1	0	0	1	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRPR_chrX_16118565_16158518	0/0	c0010	1155	1	0	0	1	0	0	copy fasta	GRPR	chrX	16118565	16158518
GRP_chr18_59215158_59235771	0/0	c0001	447	277	71	41	122	13	30	copy fasta	GRP	chr18	59215158	59235771
GRP_chr18_59215158_59235771	1/1	c0002	447	114	10	33	54	2	13	copy fasta	GRP	chr18	59215158	59235771
GRP_chr18_59215158_59235771	0/0	c0003	447	11	10	0	0	0	1	copy fasta	GRP	chr18	59215158	59235771
GRP_chr18_59215158_59235771	0/0	c0004	447	3	1	2	0	0	0	copy fasta	GRP	chr18	59215158	59235771
GRP_chr18_59215158_59235771	0/0	c0005	447	1	1	0	0	0	0	copy fasta	GRP	chr18	59215158	59235771
GRP_chr18_59215158_59235771	0/0	c0006	447	1	0	0	0	1	0	copy fasta	GRP	chr18	59215158	59235771
GRP_chr18_59215158_59235771	0/0	c0007	447	1	1	0	0	0	0	copy fasta	GRP	chr18	59215158	59235771
GRSF1_chr4_70810783_70844890	0/1	c0001	1443	315	79	52	137	10	36	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	1/0	c0002	1443	4	3	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	c0003	1443	2	2	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	c0004	1443	2	2	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	c0005	1443	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	c0006	1443	1	1	0	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	c0007	1443	1	0	1	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	c0008	1443	1	0	0	1	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRSF1_chr4_70810783_70844890	0/0	c0009	1443	1	0	1	0	0	0	copy fasta	GRSF1	chr4	70810783	70844890
GRTP1_chr13_113319163_113369130	1/1	c0001	1011	265	65	63	87	14	34	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0002	1011	4	4	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0003	1011	3	0	0	3	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0004	1011	3	0	0	3	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0005	1011	2	2	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0006	1011	2	2	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0007	1011	2	0	2	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0008	1011	1	0	0	1	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0009	1011	1	0	0	0	0	1	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0010	1011	1	0	0	0	0	1	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0011	1011	1	1	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0012	1011	1	1	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0013	1011	1	0	1	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRTP1_chr13_113319163_113369130	0/0	c0014	1011	1	1	0	0	0	0	copy fasta	GRTP1	chr13	113319163	113369130
GRWD1_chr19_48440983_48462022	0/0	c0001	1341	171	36	28	76	4	27	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	1/0	c0002	1341	129	35	14	66	2	11	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/1	c0003	1341	78	14	27	30	0	6	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	c0004	1338	42	4	5	28	2	3	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	c0005	1341	3	1	2	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	c0006	1341	2	2	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	c0007	1341	2	2	0	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	c0008	1341	1	0	0	0	0	1	copy fasta	GRWD1	chr19	48440983	48462022