JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GRWD1_chr19_48440983_48462022	0/0	c0009	1341	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	c0010	1341	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	c0011	1341	1	0	1	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	c0012	1341	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	c0013	1341	1	0	0	1	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRWD1_chr19_48440983_48462022	0/0	c0014	1341	1	0	1	0	0	0	copy fasta	GRWD1	chr19	48440983	48462022
GRXCR1_chr4_42887713_43035658	1/0	c0001	873	213	65	44	75	10	18	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	c0002	873	67	1	13	45	0	8	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/1	c0003	873	52	20	5	25	0	1	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	c0004	873	3	3	0	0	0	0	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	c0005	873	1	1	0	0	0	0	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	c0006	873	1	0	0	0	0	1	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR1_chr4_42887713_43035658	0/0	c0007	873	1	0	0	1	0	0	copy fasta	GRXCR1	chr4	42887713	43035658
GRXCR2_chr5_145853521_145878014	0/1	c0001	747	320	71	59	144	8	37	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	1/0	c0002	747	128	13	25	70	9	10	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	c0003	747	13	10	1	0	1	1	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	c0004	747	4	4	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	c0005	747	2	0	0	2	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	c0006	747	1	1	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	c0007	747	1	1	0	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GRXCR2_chr5_145853521_145878014	0/0	c0008	747	1	0	1	0	0	0	copy fasta	GRXCR2	chr5	145853521	145878014
GSAP_chr7_77305751_77421349	0/1	c0001	2565	107	6	25	62	6	7	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0002	2565	90	20	19	48	0	3	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0003	2565	50	14	4	15	4	13	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0004	2565	21	11	4	1	3	2	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0005	2565	19	2	2	12	0	3	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	1/0	c0006	2565	11	0	3	0	5	2	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0007	2565	10	0	0	10	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0008	2565	8	6	2	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0009	2565	6	3	0	3	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0010	2565	6	6	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0011	2565	5	5	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0012	2565	2	0	2	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0013	2565	2	2	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0014	2565	1	0	0	1	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0015	2565	1	0	0	1	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0016	2565	1	0	0	0	0	1	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0017	2565	1	1	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0018	2565	1	0	0	0	0	1	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0019	2565	1	1	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0020	2565	1	0	0	0	0	1	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0021	2565	1	0	1	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0022	2565	1	1	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0023	2565	1	0	0	0	0	1	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0024	2565	1	0	0	1	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0025	2565	1	0	1	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0026	2565	1	1	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0027	2565	1	0	1	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSAP_chr7_77305751_77421349	0/0	c0028	2565	1	1	0	0	0	0	copy fasta	GSAP	chr7	77305751	77421349
GSC2_chr22_19141993_19155292	1/0	c0001	618	277	53	72	103	13	35	copy fasta	GSC2	chr22	19141993	19155292