JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GSC2_chr22_19141993_19155292	0/1	c0002	618	188	44	16	109	5	13	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	c0003	618	1	0	0	1	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	c0004	618	1	1	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	c0005	618	1	0	0	1	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	c0006	618	1	1	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC2_chr22_19141993_19155292	0/0	c0007	618	1	1	0	0	0	0	copy fasta	GSC2	chr22	19141993	19155292
GSC_chr14_94763223_94775113	1/1	c0001	774	424	82	84	194	18	44	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	c0002	774	9	9	0	0	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	c0003	774	6	4	2	0	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	c0004	774	6	0	0	6	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	c0005	774	5	0	0	5	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	c0006	774	1	0	0	1	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	c0007	774	1	1	0	0	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	c0008	774	1	0	0	1	0	0	copy fasta	GSC	chr14	94763223	94775113
GSC_chr14_94763223_94775113	0/0	c0009	774	1	0	0	1	0	0	copy fasta	GSC	chr14	94763223	94775113
GSDMA_chr17_39958004_39982768	0/1	c0001	1338	114	12	24	62	5	10	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0002	1338	94	13	21	42	2	16	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0003	1338	70	29	6	24	4	7	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0004	1338	38	1	7	24	1	5	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0005	1338	31	4	2	24	0	1	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0006	1338	17	10	0	5	0	2	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0007	1338	13	11	1	0	0	1	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0008	1338	13	0	7	5	1	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0009	1338	10	2	3	2	2	1	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0010	1338	5	0	2	0	0	3	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	1/0	c0011	1338	5	1	1	0	1	1	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0012	1338	4	0	1	3	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0013	1338	3	2	1	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0014	1338	3	3	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0015	1338	3	3	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0016	1338	2	2	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0017	1338	2	2	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0018	1338	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0019	1338	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0020	1338	1	1	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0021	1338	1	0	0	0	0	1	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0022	1338	1	0	1	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0023	1338	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0024	1338	1	1	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0025	1338	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0026	1338	1	0	1	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0027	1338	1	0	0	1	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMA_chr17_39958004_39982768	0/0	c0028	1338	1	1	0	0	0	0	copy fasta	GSDMA	chr17	39958004	39982768
GSDMB_chr17_39899595_39923635	1/1	c0001	1251	227	54	30	108	6	27	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	c0002	1251	125	13	33	63	7	9	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	c0003	1251	16	16	0	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	c0004	1251	16	1	6	9	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	c0005	1251	7	0	4	0	3	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	c0006	1251	3	2	0	0	0	1	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	c0007	1251	2	0	2	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635