JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GSDMB_chr17_39899595_39923635	0/0	c0008	1251	1	1	0	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	c0009	1251	1	0	1	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	c0010	1251	1	0	0	0	0	1	copy fasta	GSDMB	chr17	39899595	39923635
GSDMB_chr17_39899595_39923635	0/0	c0011	1251	1	1	0	0	0	0	copy fasta	GSDMB	chr17	39899595	39923635
GSDMC_chr8_129743196_129791624	0/0	c0001	1527	180	56	28	84	5	7	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	1/0	c0002	1527	109	2	17	66	8	15	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0003	1527	53	2	2	40	0	9	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/1	c0004	1527	15	0	6	5	1	2	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0005	1527	8	0	4	1	1	2	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0006	1527	7	4	3	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0007	1527	7	0	6	0	1	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0008	1527	6	5	1	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0009	1527	4	3	0	1	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0010	1527	3	3	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0011	1527	3	3	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0012	1527	3	0	0	3	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0013	1527	2	2	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0014	1527	2	2	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0015	1527	2	0	0	2	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0016	1527	2	1	1	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0017	1527	1	1	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0018	1527	1	1	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0019	1527	1	1	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0020	1527	1	0	0	1	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0021	1527	1	0	0	0	0	1	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0022	1527	1	1	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0023	1527	1	0	1	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0024	1527	1	1	0	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0025	1527	1	0	0	1	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMC_chr8_129743196_129791624	0/0	c0026	1527	1	0	1	0	0	0	copy fasta	GSDMC	chr8	129743196	129791624
GSDMD_chr8_143553346_143568062	0/0	c0001	1455	260	36	48	137	12	27	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/1	c0002	1455	77	16	23	29	0	8	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0003	1455	31	8	7	7	6	3	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0004	1455	12	11	1	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0005	1455	5	5	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0006	1455	4	0	0	4	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0007	1455	3	1	2	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0008	1455	3	3	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0009	1455	3	0	3	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0010	1455	2	2	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0011	1455	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0012	1455	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0013	1455	1	0	0	0	0	1	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0014	1455	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0015	1455	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0016	1455	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0017	1455	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0018	1455	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0019	1455	1	0	0	1	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0020	1455	1	0	0	1	0	0	copy fasta	GSDMD	chr8	143553346	143568062