JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GSDMD_chr8_143553346_143568062	0/0	c0021	1455	1	0	0	1	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0022	1455	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0023	1455	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0024	1455	1	1	0	0	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0025	1455	1	0	0	0	0	1	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0026	1455	1	0	0	1	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDMD_chr8_143553346_143568062	0/0	c0027	1455	1	0	0	1	0	0	copy fasta	GSDMD	chr8	143553346	143568062
GSDME_chr7_24693355_24762464	0/0	c0001	1491	154	58	17	69	1	9	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0002	1491	60	1	11	39	4	5	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0003	1491	58	10	4	35	1	8	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	1/1	c0004	1491	56	12	21	1	10	10	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0005	1491	31	1	7	21	0	2	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0006	1491	26	6	2	18	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0007	1491	7	3	1	0	2	1	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0008	1491	4	0	0	3	0	1	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0009	1491	2	0	0	2	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0010	1491	2	1	1	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0011	1491	2	2	0	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0012	1491	2	2	0	0	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0013	1491	1	0	0	1	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0014	1491	1	0	0	1	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0015	1491	1	0	0	1	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0016	1491	1	0	0	0	0	1	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0017	1491	1	0	0	0	0	1	copy fasta	GSDME	chr7	24693355	24762464
GSDME_chr7_24693355_24762464	0/0	c0018	1491	1	0	0	1	0	0	copy fasta	GSDME	chr7	24693355	24762464
GSE1_chr16_85608322_85681200	0/0	c0001	3654	124	15	29	54	4	22	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	1/1	c0002	3654	56	26	8	4	5	11	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0003	3654	12	1	9	2	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0004	3648	11	2	1	1	0	7	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0005	3648	8	2	5	0	1	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0006	3648	7	6	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0007	3654	6	6	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0008	3648	4	3	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0009	3655	3	1	1	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0010	3655	3	0	1	0	0	2	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0011	3654	3	2	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0012	3648	2	1	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0013	3654	2	2	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0014	3654	2	0	2	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0015	3654	2	2	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0016	3648	2	0	0	1	1	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0017	3648	2	2	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0018	3648	2	2	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0019	3654	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0020	3654	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0021	3654	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0022	3673	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0023	3655	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0024	3648	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0025	3648	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200