JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GSE1_chr16_85608322_85681200	0/0	c0026	3678	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0027	3666	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0028	3654	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0029	3659	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0030	3648	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0031	3654	1	0	0	0	1	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0032	3654	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0033	3654	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0034	3654	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0035	3654	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0036	3654	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0037	3654	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0038	3654	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0039	3654	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0040	3648	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0041	3654	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0042	3648	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0043	3648	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0044	3648	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0045	3648	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0046	3642	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0047	3642	1	1	0	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0048	3642	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0049	3654	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0050	3654	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0051	3654	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0052	3654	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0053	3648	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0054	3648	1	0	0	0	0	1	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0055	3654	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0056	3654	1	0	1	0	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSE1_chr16_85608322_85681200	0/0	c0057	3648	1	0	0	1	0	0	copy fasta	GSE1	chr16	85608322	85681200
GSG1L2_chr17_9795608_9827079	0/0	c0001	882	136	12	24	83	6	11	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	1/1	c0002	882	132	6	25	78	3	18	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0003	882	71	25	3	36	0	7	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0004	882	64	36	7	17	2	2	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0005	882	17	2	10	0	2	3	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0006	882	14	0	5	0	5	4	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0007	882	12	5	0	7	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0008	882	11	5	2	4	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0009	882	3	3	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0010	882	3	0	0	0	0	3	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0011	882	2	0	2	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0012	882	1	0	0	0	0	1	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0013	882	1	1	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0014	882	1	1	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0015	882	1	1	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0016	882	1	0	1	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0017	882	1	0	0	0	0	1	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0018	882	1	0	1	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079