JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GSG1L2_chr17_9795608_9827079	0/0	c0019	892	1	0	0	1	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L2_chr17_9795608_9827079	0/0	c0020	882	1	1	0	0	0	0	copy fasta	GSG1L2	chr17	9795608	9827079
GSG1L_chr16_27782528_28068714	0/1	c0001	996	134	33	26	46	5	23	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	1/0	c0002	996	98	46	18	19	1	13	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	c0003	996	5	0	0	5	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	c0004	996	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	c0005	996	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1L_chr16_27782528_28068714	0/0	c0006	996	1	1	0	0	0	0	copy fasta	GSG1L	chr16	27782528	28068714
GSG1_chr12_13078532_13108667	1/1	c0001	1089	387	88	59	180	15	43	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	c0002	1089	43	0	10	32	1	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	c0003	1089	6	6	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	c0004	1089	3	3	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	c0005	1089	2	0	2	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	c0006	1089	2	0	0	0	0	2	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	c0007	1089	2	0	0	2	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	c0008	1089	1	1	0	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	c0009	1089	1	0	0	0	0	1	copy fasta	GSG1	chr12	13078532	13108667
GSG1_chr12_13078532_13108667	0/0	c0010	1089	1	0	1	0	0	0	copy fasta	GSG1	chr12	13078532	13108667
GSK3A_chr19_42225190_42247602	1/1	c0001	1452	223	58	40	82	6	35	copy fasta	GSK3A	chr19	42225190	42247602
GSK3A_chr19_42225190_42247602	0/0	c0002	1452	1	0	0	0	0	1	copy fasta	GSK3A	chr19	42225190	42247602
GSK3B_chr3_119816321_120099447	1/1	c0001	1263	261	55	34	136	8	26	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	c0002	1263	22	14	1	7	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	c0003	1263	5	5	0	0	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	c0004	1263	5	5	0	0	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	c0005	1263	4	4	0	0	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	c0006	1263	1	0	0	1	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	c0007	1263	1	1	0	0	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSK3B_chr3_119816321_120099447	0/0	c0008	1263	1	0	1	0	0	0	copy fasta	GSK3B	chr3	119816321	120099447
GSKIP_chr14_96358526_96392288	1/1	c0001	420	407	94	68	188	14	41	copy fasta	GSKIP	chr14	96358526	96392288
GSKIP_chr14_96358526_96392288	0/0	c0002	420	1	0	0	0	0	1	copy fasta	GSKIP	chr14	96358526	96392288
GSN_chr9_121263162_121337842	1/0	c0001	2196	203	50	46	75	13	18	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0002	2196	40	2	11	23	0	4	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0003	2196	28	6	2	19	0	1	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0004	2196	8	0	3	4	0	1	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0005	2196	8	8	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0006	2196	6	3	1	0	0	2	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0007	2196	5	0	0	4	0	1	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0008	2196	3	2	1	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0009	2196	3	3	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0010	2196	2	1	1	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0011	2196	2	2	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0012	2196	2	2	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0013	2196	1	1	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0014	2196	1	0	0	1	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0015	2196	1	0	1	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0016	2196	1	0	0	1	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0017	2196	1	0	0	0	0	1	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/1	c0018	2196	1	0	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0019	2196	1	1	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0020	2196	1	1	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842