Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AKAP12_chr6_151234967_151363559	0/0	c0035	5349	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0036	5349	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0037	5349	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0038	5349	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0039	5349	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0040	5349	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0041	5352	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0042	5352	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0043	5352	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0044	5349	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0045	5352	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0046	5352	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0047	5349	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0048	5349	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0049	5352	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0050	5352	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0051	5352	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0052	5352	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0053	5352	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0054	5352	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0055	5352	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0056	5352	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0057	5352	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0058	5352	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0059	5352	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0060	5352	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0061	5349	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0062	5352	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0063	5352	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0064	5352	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0065	5352	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0066	5352	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0067	5352	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0068	5352	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0069	5352	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0070	5352	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	c0071	5352	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP13_chr15_85375603_85754355	0/0	c0001	8442	58	9	2	36	2	9	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	1/0	c0002	8442	40	12	5	17	0	5	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0003	8442	32	0	6	24	0	2	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0004	8442	28	2	2	15	3	6	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0005	8442	15	1	8	1	1	4	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0006	8442	10	8	2	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0007	8442	10	0	1	9	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0008	8442	9	0	4	5	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0009	8442	8	0	4	0	1	3	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0010	8442	8	8	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0011	8442	6	3	3	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0012	8442	6	0	3	2	1	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	c0013	8442	5	5	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355