JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GSN_chr9_121263162_121337842	0/0	c0021	2196	1	0	0	0	1	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0022	2196	1	0	0	1	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0023	2196	1	1	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSN_chr9_121263162_121337842	0/0	c0024	2196	1	1	0	0	0	0	copy fasta	GSN	chr9	121263162	121337842
GSPT1_chr16_11863128_11920956	0/0	c0001	1914	173	42	27	79	3	22	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0002	1914	78	16	17	44	0	1	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0003	1917	35	1	13	15	0	6	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/1	c0004	1914	28	4	14	2	2	5	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0005	1914	9	2	1	0	0	6	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0006	1917	8	7	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	1/0	c0007	1914	8	7	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0008	1914	7	0	1	6	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0009	1914	3	0	3	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0010	1929	2	2	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0011	1920	2	0	0	0	0	2	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0012	1917	2	0	0	0	0	2	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0013	1914	2	0	0	2	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0014	1914	2	1	1	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0015	1914	2	2	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0016	1914	1	0	1	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0017	1926	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0018	1923	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0019	1923	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0020	1923	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0021	1920	1	0	0	0	1	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0022	1920	1	1	0	0	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0023	1917	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0024	1914	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0025	1914	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT1_chr16_11863128_11920956	0/0	c0026	1914	1	0	0	1	0	0	copy fasta	GSPT1	chr16	11863128	11920956
GSPT2_chrX_51738442_51751232	1/1	c0001	1887	296	67	43	143	11	30	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	c0002	1887	5	5	0	0	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	c0003	1887	5	5	0	0	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	c0004	1887	1	0	0	1	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	c0005	1887	1	0	1	0	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	c0006	1884	1	0	0	1	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	c0007	1887	1	0	0	1	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	c0008	1888	1	0	0	1	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSPT2_chrX_51738442_51751232	0/0	c0009	1887	1	0	0	1	0	0	copy fasta	GSPT2	chrX	51738442	51751232
GSR_chr8_30673066_30732846	1/1	c0001	1569	306	65	64	126	12	37	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	c0002	1569	17	9	0	5	0	3	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	c0003	1569	7	7	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	c0004	1569	6	5	0	0	1	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	c0005	1569	4	2	2	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	c0006	1569	4	4	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	c0007	1569	1	0	0	0	1	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	c0008	1569	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	c0009	1569	1	0	0	1	0	0	copy fasta	GSR	chr8	30673066	30732846
GSR_chr8_30673066_30732846	0/0	c0010	1569	1	1	0	0	0	0	copy fasta	GSR	chr8	30673066	30732846
GSS_chr20_34923432_34960806	1/1	c0001	1425	347	88	54	156	16	31	copy fasta	GSS	chr20	34923432	34960806