JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
GSS_chr20_34923432_34960806	0/0	c0002	1425	1	0	1	0	0	0	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	c0003	1425	1	1	0	0	0	0	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	c0004	1425	1	1	0	0	0	0	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	c0005	1425	1	0	1	0	0	0	copy fasta	GSS	chr20	34923432	34960806
GSS_chr20_34923432_34960806	0/0	c0006	1425	1	0	0	0	0	1	copy fasta	GSS	chr20	34923432	34960806
GSTA1_chr6_52786371_52808816	1/0	c0001	669	356	91	57	170	10	27	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/1	c0002	669	70	2	17	30	2	18	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	c0003	669	2	0	0	2	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	c0004	669	1	0	0	0	0	1	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	c0005	669	1	1	0	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	c0006	669	1	0	1	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	c0007	669	1	1	0	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	c0008	669	1	0	0	1	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	c0009	669	1	0	0	1	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	c0010	669	1	0	1	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA1_chr6_52786371_52808816	0/0	c0011	669	1	1	0	0	0	0	copy fasta	GSTA1	chr6	52786371	52808816
GSTA2_chr6_52745087_52768475	0/0	c0001	669	245	35	52	121	12	25	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	c0002	669	110	50	7	47	3	3	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	c0003	669	42	0	2	31	0	9	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	1/1	c0004	669	25	0	12	0	2	9	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	c0005	669	11	8	3	0	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	c0006	669	3	0	0	3	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	c0007	669	1	1	0	0	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	c0008	669	1	1	0	0	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	c0009	669	1	1	0	0	0	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA2_chr6_52745087_52768475	0/0	c0010	669	1	0	0	0	1	0	copy fasta	GSTA2	chr6	52745087	52768475
GSTA3_chr6_52891646_52914698	1/1	c0001	669	400	77	73	194	16	38	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	c0002	669	10	10	0	0	0	0	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	c0003	669	5	5	0	0	0	0	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	c0004	669	4	0	0	4	0	0	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	c0005	669	2	0	0	0	0	2	copy fasta	GSTA3	chr6	52891646	52914698
GSTA3_chr6_52891646_52914698	0/0	c0006	669	1	0	1	0	0	0	copy fasta	GSTA3	chr6	52891646	52914698
GSTA4_chr6_52972953_53000284	1/1	c0001	669	318	92	54	127	13	30	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	c0002	669	3	0	2	0	1	0	copy fasta	GSTA4	chr6	52972953	53000284
GSTA4_chr6_52972953_53000284	0/0	c0003	669	3	0	0	3	0	0	copy fasta	GSTA4	chr6	52972953	53000284
GSTA5_chr6_52826848_52845813	0/1	c0001	669	367	81	75	157	14	39	copy fasta	GSTA5	chr6	52826848	52845813
GSTA5_chr6_52826848_52845813	1/0	c0002	669	61	17	5	29	0	9	copy fasta	GSTA5	chr6	52826848	52845813
GSTA5_chr6_52826848_52845813	0/0	c0003	669	1	0	0	1	0	0	copy fasta	GSTA5	chr6	52826848	52845813
GSTA5_chr6_52826848_52845813	0/0	c0004	669	1	0	0	1	0	0	copy fasta	GSTA5	chr6	52826848	52845813
GSTCD_chr4_105703784_105852725	1/1	c0001	1902	159	52	37	43	11	14	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	c0002	1902	22	19	3	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	c0003	1902	2	2	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	c0004	1902	1	0	0	0	1	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	c0005	1902	1	1	0	0	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTCD_chr4_105703784_105852725	0/0	c0006	1902	1	0	0	1	0	0	copy fasta	GSTCD	chr4	105703784	105852725
GSTK1_chr7_143258441_143274115	1/1	c0001	681	378	96	72	161	10	37	copy fasta	GSTK1	chr7	143258441	143274115
GSTK1_chr7_143258441_143274115	0/0	c0002	681	1	0	0	0	1	0	copy fasta	GSTK1	chr7	143258441	143274115
GSTK1_chr7_143258441_143274115	0/0	c0003	681	1	0	0	0	1	0	copy fasta	GSTK1	chr7	143258441	143274115
GSTK1_chr7_143258441_143274115	0/0	c0004	681	1	0	0	1	0	0	copy fasta	GSTK1	chr7	143258441	143274115
GSTK1_chr7_143258441_143274115	0/0	c0005	681	1	0	0	0	0	1	copy fasta	GSTK1	chr7	143258441	143274115